Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2646 ATGAAGAGGGAGCATCATCATCTTCTTCATCCTCGTCCGGATCCGCCTTCCATGGCTGCCGCCGCCTCCTCTAATGGAAAGGCTAAGCTCTGGGAGGAGGAGGAGGAAGCCCATCTTGGTGGAGGCATGGATGAGCTTCTAGCTGTTTTGGGTTACAAGGTTAAGTCCTCGGACATGGCTGATGTTGCTCAGAAGCTCGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGCCTTTCCCATCTCGCTTTTGATACTGTTCATTATAATCCTTCCGATCTCTCCACTTGGCTTGAAAGTATGCTCACCGAGCTCCATCCGCCGCCGCCCCCCTCGCAGCTCGATGATTCCTCGTTTTTAGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGATCCCCAACGCCAAACCAGCAGCCGGATTTTTGAGGAATCTTGTAGCTCTGATTACGACCTTAAAGCGATTACGAGCAGCGCGATTTATTCACCCAGAGAGAACAAGCGGTTGAAAGCCTCGTCTGAATCGGACTCCGATTTGTTCTCCACCTCGGCGATTGCGGCTTCCGATTCTGGAACTCGCCCTGTAGTCCTCGTCGACTCGCAGGAGAACGGAATTCAACTTGTTCATGCTCTGATGGCTTGCGCCGAAGCCGTACAGCAGAATAATCTGAATCTGGCGGAGGCTCTGGTGAAGCGAATTGGTTACTTGGCGGTTTCTCAAGCCGGAGCGATGAGGAAGGTCGCTACGTTCTTCGCCGAAGCATTGGCGCGACGAATCTACAGGCTCTGCCCTGAGAATCCACTCGATCATTCAATGTCCGATATGCTTCAGATGCATTTCTACGAGACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAGCGCGTTCACGTGATCGATTTCTCGATGAATCAAGGGATGCAGTGGCCGGCTCTGATTCAAGCCCTAGCTCTACGGCCGAGTGGTCCCCCAGCCTTCCGACTCACCGGAATCGGACCTCCGGCACCGGATAACTCCGATTACCTTCAAGAAGTCGGCTGGAAGCTCGCTAAATTAGCCGAAACTATCCATGTGGAGTTCGAATACAGAGGATTCGTCGCGAATAGCTTGGCGGATCTGGACGCGTCGATGCTGGAGCTCCGGCCGAGCGAGGTGGAATCGGTGGTGGTAAACTCGGTGTTCGATATGCACAAGCTACTGGCTCGGCCGGGCGCCATCGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTAGACCGGTTCACTGAGTCACTCCATTACTACTCGACGCTCTTCGACTCGTTGGAGGGCTCGCCCAACAACCAGGACAAGATGATGTCGGAAATGTACCTTGGGAAGCAAATTTGCAACGTGGTGGCCAGCGAAGGAACCGACCGAGTCGAGCGCCATGAGACTCTAACTCAGTGGCGGACTCGGTTATCCTCCGCCGGGTTCGAGCCAATCCATCTCGGCTCGAACGCGTTCAAGCAAGCGAGTATGCTCCTCGCCCTATTCGGGAGCGGAGAAGGGTACCGGGTAGAAGAGAACAACGGATCACTAATGCTCGGGTGGCACACCCGCCCCCTCATCGCTACCTCCGCCTGGAAACTCGGCAACAACTCGGTTGTAGCTCACTGA 1740 54.25 MKREHHHLLHPRPDPPSMAAAASSNGKAKLWEEEEEAHLGGGMDELLAVLGYKVKSSDMADVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMLTELHPPPPPSQLDDSSFLAPAESSTITSIDYDPQRQTSSRIFEESCSSDYDLKAITSSAIYSPRENKRLKASSESDSDLFSTSAIAASDSGTRPVVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDHSMSDMLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALIQALALRPSGPPAFRLTGIGPPAPDNSDYLQEVGWKLAKLAETIHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFDMHKLLARPGAIEKVLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKMMSEMYLGKQICNVVASEGTDRVERHETLTQWRTRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLMLGWHTRPLIATSAWKLGNNSVVAH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 73957125 73959629 + Hsped.02g26460.1 Hepe02g2646 564147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2646 579 Pfam GRAS domain family 211 570 IPR005202 -
Hepe02g2646 579 Coils Coil 52 72 - -
Hepe02g2646 579 MobiDBLite consensus disorder prediction 1 27 - -
Hepe02g2646 579 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 178 569 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Hepe02g2646 579 Gene3D - 42 107 IPR038088 -
Hepe02g2646 579 ProSiteProfiles GRAS family profile. 202 570 IPR005202 -
Hepe02g2646 579 SMART DELLA_2 44 117 - -
Hepe02g2646 579 FunFam DELLA protein GAI 42 107 - -
Hepe02g2646 579 Pfam Transcriptional regulator DELLA protein N terminal 44 111 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2393 Hepe-Chr2:69235915 Hepe02g2646 Hepe-Chr2:73957125 7.21e-230 dispersed
Hepe02g2646 Hepe-Chr2:73957125 Hepe09g0722 Hepe-Chr9:6884803 7.45e-147 dispersed
Hepe02g2646 Hepe-Chr2:73957125 Hepe04g0646 Hepe-Chr4:59714816 1.39e-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55116 PF03514 GRAS 7.20E-136 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2646 K14494 - csv:101204164 1018.07