Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2667 ATGAGCAGCGAAGTTGTCGGCAACGGCCGGCGGCGTGCCTTAGCGCTGCAACTTCTTGACCTGGTTCGTGACTTTGTTCTGATGTCAGGGAGGTCCATCGCTGGCGCTGGAGATGTCATGAAAAAGGATTGCACCGATCTCATCCGTCGGATCGCGATCCTGATTCACCTGGCGGAGGAGATAACAAATTTCCGCGGCGGCGACAATTTTGAGGAATTGAATGAGTCTGGTTCTTCTTCTTCTTCTTGTTTGGATTGCCTTTCGGAAATGGTCGGAGCAATTCAGGCGGCGAAGCGCCTTCTGTACGCTGCTTTGACTTTCTCTGTATACGACGATGAGCCTTCTGGGACTTCGACTGAGGGGGCAACCAAAAAATTAGTAGTACAATTCGAGTACGTGACAACCAGATTGGATACTGCACTCTCTAATCTGCCATACGACCACTTTTGTGTTTCAGATGAAGTTCAGGAACAGGTTGATTTGGTTAGAGCCCAGTTGAGGAGAGCATCAAATAAGTATGAGTCTATGTCTAAACCTGCAGACAAGAAGCTTCAAGCTCGAGGTTCTGTAAAATGGATGGTCAACAATGATGTCAAGAGCATGTCTAGTGTTGATGATTCAGATGCTGAGTCTCAGCATCGTCCCCGGAACCGGAACCGCGACAGTCGGAACAGTTTCGATTCCGAGGAGCTGAAGAACTTGAATTCATGTTTGGATGAGTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGCTGAGCCAAGATGAGGTTGGAAAGTCTGATGATGAAATTGAAATTCCTGAGAATTTCTTATGCCCCATTTCCCTTGAATTGATGACGGATCCCATCATCGTCTCGACGGGACAGACATACGAGAGATCCAACATACAGAACTGGATAAACAGAGGAAATACAACATGTCCAAAAACTCAGGAGCAGCTCCAAGCTCTCACCCTCACTCCAAATTTTCTTATGAAAAAACTCATCTATGAATGGTGTCAAGAACACAATGTCAATCTAGAGCAGGGACTAACCAACAGGAAACTTAAGAAGCACAGATCATTCGAAGACGGTTGCCAAAGGACTCTGCCGATCAAAACTCTGGTTCGACACCTTTCTTTGGGGTCGATTTGGGAGCAGAAGGCGGCCGTGAGTGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCAGAGAGTTGAAATAGCACAAGCAGGGGCAATCCCAGAGCTGGTTATCCTTTTAAGTTCAGAAGATGTTGTAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCATGACCAGAACAAGAGACTTGTTATGCTTTCTGGTGCAGTTTCATACATTTCCCAAGTCCTCAAAGTTGGGAGTATGGAAGTGAGAGAGTGTGCCGCTGCAACGATTTACAGCTTGTCGTTAGCCGACGAGAACAAGGCGATAATCGGGGCTTCGGGCGTTATCCCGGACCTGTTGGAAATCCTCGAGATCGGGAGCACGAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTTTGAGGGCTGGGATTGTCAAACCATTGTTGAAAATGCTGGCTGATTCAAATGGCTCCTTGGTCGACGAAGCACTCTATACAATGTCGGTTCTTTGCGGGCATCCGGAGGCGAAGGCTGCGATAGGGAATGCGAATTCGCTGCTCGTTTTGACCGACGTTCTGAAGACGGGCTCGTCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTACTTGAATTGTGCAAGGGAGATAGGGAGAAGCTGGAATGGTTAAGCAGGCTTGGCGCCGCGGTGCCGTTGATGAAACTTGCCGAGGACGGCACCGGGAGAGCGAGGCGGAAGGCTGTTTCCTTGTTGGACCAACTCAGAAAATCATGA 1941 48.07 MSSEVVGNGRRRALALQLLDLVRDFVLMSGRSIAGAGDVMKKDCTDLIRRIAILIHLAEEITNFRGGDNFEELNESGSSSSSCLDCLSEMVGAIQAAKRLLYAALTFSVYDDEPSGTSTEGATKKLVVQFEYVTTRLDTALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYESMSKPADKKLQARGSVKWMVNNDVKSMSSVDDSDAESQHRPRNRNRDSRNSFDSEELKNLNSCLDECSSVVHSDMEDVLASKLSQDEVGKSDDEIEIPENFLCPISLELMTDPIIVSTGQTYERSNIQNWINRGNTTCPKTQEQLQALTLTPNFLMKKLIYEWCQEHNVNLEQGLTNRKLKKHRSFEDGCQRTLPIKTLVRHLSLGSIWEQKAAVSEIRKLSKSSSDQRVEIAQAGAIPELVILLSSEDVVTQENAISCILNLSLHDQNKRLVMLSGAVSYISQVLKVGSMEVRECAAATIYSLSLADENKAIIGASGVIPDLLEILEIGSTRGQKDAAGALLNLCMYQGNKGRALRAGIVKPLLKMLADSNGSLVDEALYTMSVLCGHPEAKAAIGNANSLLVLTDVLKTGSSRSKENAAAVLLELCKGDREKLEWLSRLGAAVPLMKLAEDGTGRARRKAVSLLDQLRKS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74293810 74300873 + Hsped.02g26670.1 Hepe02g2667 564168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2667 646 SUPERFAMILY RING/U-box 265 343 - -
Hepe02g2667 646 MobiDBLite consensus disorder prediction 201 227 - -
Hepe02g2667 646 SUPERFAMILY ARM repeat 370 643 IPR016024 -
Hepe02g2667 646 SMART Ubox_2 274 337 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g2667 646 Pfam U-box domain 271 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g2667 646 CDD RING-Ubox_PUB 272 324 IPR045210 -
Hepe02g2667 646 MobiDBLite consensus disorder prediction 203 227 - -
Hepe02g2667 646 Pfam Armadillo/beta-catenin-like repeat 399 438 IPR000225 GO:0005515(InterPro)
Hepe02g2667 646 Pfam Armadillo/beta-catenin-like repeat 482 520 IPR000225 GO:0005515(InterPro)
Hepe02g2667 646 FunFam RING-type E3 ubiquitin transferase 271 343 - -
Hepe02g2667 646 Gene3D - 368 646 IPR011989 -
Hepe02g2667 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 359 IPR013083 -
Hepe02g2667 646 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g2667 646 FunFam RING-type E3 ubiquitin transferase 355 646 - -
Hepe02g2667 646 SMART arm_5 522 562 IPR000225 GO:0005515(InterPro)
Hepe02g2667 646 SMART arm_5 481 521 IPR000225 GO:0005515(InterPro)
Hepe02g2667 646 SMART arm_5 399 439 IPR000225 GO:0005515(InterPro)
Hepe02g2667 646 SMART arm_5 440 480 IPR000225 GO:0005515(InterPro)
Hepe02g2667 646 SMART arm_5 563 603 IPR000225 GO:0005515(InterPro)
Hepe02g2667 646 PANTHER U BOX DOMAIN-CONTAINING 38 644 - -
Hepe02g2667 646 Coils Coil 152 172 - -
Hepe02g2667 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0523 Hepe-Chr1:63935206 Hepe02g2667 Hepe-Chr2:74293810 2.12e-107 dispersed
Hepe02g2667 Hepe-Chr2:74293810 Hepe10g1222 Hepe-Chr10:47330852 2.07e-46 dispersed
Hepe02g2667 Hepe-Chr2:74293810 Hepe08g0796 Hepe-Chr8:7142474 1.61e-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2667 - - - 0.0