Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2673 ATGGCGATTTTACCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCCGGCTTTGCTTCTTCCCCGTCTCGTCCTTCTTTTGCGATAGGACTGGACATGAACCGAGTACCGGTGGCGGGAGAGGCGGAGGAAGAATGGGCGGTGGCGCCGAGCGCGGAGGTGGAGACAGAGGAAGAGAGCTGCATTAATAATGGAGGTCATCCAAGGAAGAAGCTTCGTCTTTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTCAAGATCAACCATACATTAAACACTAAGCAGAAGGAAACTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTATGGTTTCAGAATCGTAGGGCCAGGAACAAGCTGAAGCAAACCGAGATAGAATGTGAATATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGGCGGCTGCGGCGAGAATTGGAGGAGCTGAGGGCCGTCAAGGTTGCTCCGCCCGCCGTGGTTATTTCACCCCATGGTCGACAGCCGCCACTCCCCGTGTCCACTATAACCATGTGTCCCCGGTGCGAGCGTGTAACCGCCGCCACTGTAACATCTAGTAAGCTGGCTGCAGCGACCAGGACCGCCACCGCCACTACCACCGCAATGCCATCCAAGGCGGTTCTGTCCGCCCTCAAATTGCGGCAGCCATCGCGAGCTTGCTGA 705 53.33 MAILPINSSNLDLSISMPGFASSPSRPSFAIGLDMNRVPVAGEAEEEWAVAPSAEVETEEESCINNGGHPRKKLRLSKDQSRLLEESFKINHTLNTKQKETLAMELKLKPRQVEVWFQNRRARNKLKQTEIECEYLKRWFGSLTEQNRRLRRELEELRAVKVAPPAVVISPHGRQPPLPVSTITMCPRCERVTAATVTSSKLAAATRTATATTTAMPSKAVLSALKLRQPSRAC 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74407427 74413484 - Hsped.02g26730.1 Hepe02g2673 564174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2673 234 SMART halz 127 170 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g2673 234 Gene3D - 64 133 - -
Hepe02g2673 234 SMART HOX_1 69 131 IPR001356 GO:0003677(InterPro)
Hepe02g2673 234 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677(InterPro)
Hepe02g2673 234 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Hepe02g2673 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 210 IPR050762 -
Hepe02g2673 234 FunFam Homeobox-leucine zipper protein 18 54 132 - -
Hepe02g2673 234 Pfam Homeobox associated leucine zipper 127 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g2673 234 CDD homeodomain 70 128 IPR001356 GO:0003677(InterPro)
Hepe02g2673 234 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe02g2673 234 Pfam Homeodomain 71 125 IPR001356 GO:0003677(InterPro)
Hepe02g2673 234 Coils Coil 140 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0469 Hepe-Chr1:61314157 Hepe02g2673 Hepe-Chr2:74407427 6.90e-76 dispersed
Hepe02g2673 Hepe-Chr2:74407427 Hepe07g0591 Hepe-Chr7:6437643 5.83e-41 dispersed
Hepe02g2673 Hepe-Chr2:74407427 Hepe04g1352 Hepe-Chr4:69173731 1.76e-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55117 PF00046 Homeodomain 1.30E-16 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2673 K09338 - csv:101206325 300.827