Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2686 ATGCACAAGAGCAGCAGTTCTGCGTCGAAAACTATGTCATCGTCGTCGCATCTCAAGTCACAGCTTCAAACGAACGATGTTTATGCTTCCCTCTATAATTCCCCAATCTTCGCTTCGAAGCAATCCGTACCGGTCTCTCTTCCATTGACTCTGTATGCCGACTCGCCTCAATCCGCTTCAAAATCCATAAGCAGCCACCTCTATCAAACTCGGGTGGTTCAAGATCACCAGGAAATGGTCAATCGTCATAGTCTCTGTCTGACTCATCTTCGGGAAGCGACAGAAGAAGCCGATTCTCTTCGCCAAGAAAATATTCACCTCAGAAGTATTAACCACGAGCTTAGCAAACACCTGAGCCTTCTGATCCACGCGTCGGTTCAGAAGCAGTACGGCTCCCATGATCAAGCTCCACCGTTAAGTTTCGTTGAGGGATTCCGCGGACTCAGTATCTCGGAGAAGGGAGGAAGCAGTTCCGCATGGGAAGATGTCTCCGATGAGAGTCCGACCAGCGTTATGGAGGGCGGAAGGGGAGTAGAGGGCGTTGAGGTGGAAAGGTTTTCCCTCCCTAAGAGCATCTCCGTCAGATCCAATGGATACCTGAAGATTGCTCAAGGCAGCGCCACCAGTCAGGGCGGAAAGCTCCGCGCCTCATCTCGTCCGAGAACGGCAAGTCCTGTTAAGGTCACGCAAAAGGTGTACGTGCAAGGAGTGAAAGAAGAAGAAAAGCCACTGGAACTGGAGGTGTACAACCAGGGCATGTTCAAAACGGAGCTGTGCAACAAATGGCAGGAAACAGGCAGCTGCCCATATGGAGACCACTGCCAATTTGCCCACGGAATAGAGGAGCTTCGCCCTGTGATCCGCCACCCCCGCTACAAGACTGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCGTATGGTCACCGCTGCCACTTCCGCCATGCCCTCACTGACCAGGAAAGGATGATGGGGTCACTGAAGCCCACCACCTGCAGGACCACCCCCAAGCTGGACAGGTGA 1026 53.51 MHKSSSSASKTMSSSSHLKSQLQTNDVYASLYNSPIFASKQSVPVSLPLTLYADSPQSASKSISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADSLRQENIHLRSINHELSKHLSLLIHASVQKQYGSHDQAPPLSFVEGFRGLSISEKGGSSSAWEDVSDESPTSVMEGGRGVEGVEVERFSLPKSISVRSNGYLKIAQGSATSQGGKLRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERMMGSLKPTTCRTTPKLDR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74610364 74614518 - Hsped.02g26860.1 Hepe02g2686 564187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2686 341 ProSiteProfiles Zinc finger C3H1-type profile. 291 319 IPR000571 GO:0046872(InterPro)
Hepe02g2686 341 Coils Coil 90 110 - -
Hepe02g2686 341 SMART c3hfinal6 291 318 IPR000571 GO:0046872(InterPro)
Hepe02g2686 341 SMART c3hfinal6 253 280 IPR000571 GO:0046872(InterPro)
Hepe02g2686 341 ProSiteProfiles Zinc finger C3H1-type profile. 253 281 IPR000571 GO:0046872(InterPro)
Hepe02g2686 341 FunFam zinc finger CCCH domain-containing protein 15-like 247 286 - -
Hepe02g2686 341 SUPERFAMILY CCCH zinc finger 250 285 IPR036855 GO:0046872(InterPro)
Hepe02g2686 341 Gene3D - 287 323 - -
Hepe02g2686 341 Gene3D - 247 286 - -
Hepe02g2686 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 279 IPR000571 GO:0046872(InterPro)
Hepe02g2686 341 FunFam Zinc finger protein 36, C3H1 type-like 1 287 323 - -
Hepe02g2686 341 MobiDBLite consensus disorder prediction 152 174 - -
Hepe02g2686 341 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 319 IPR045877 GO:0003729(InterPro)
Hepe02g2686 341 SUPERFAMILY CCCH zinc finger 287 321 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2686 Hepe-Chr2:74610364 Hepe02g3417 Hepe-Chr2:83587565 6.55e-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55118 PF00642 zf-CCCH 5.20E-12 CL0537 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2686 K18753 - csv:101203274 580.867