Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g2686 | ATGCACAAGAGCAGCAGTTCTGCGTCGAAAACTATGTCATCGTCGTCGCATCTCAAGTCACAGCTTCAAACGAACGATGTTTATGCTTCCCTCTATAATTCCCCAATCTTCGCTTCGAAGCAATCCGTACCGGTCTCTCTTCCATTGACTCTGTATGCCGACTCGCCTCAATCCGCTTCAAAATCCATAAGCAGCCACCTCTATCAAACTCGGGTGGTTCAAGATCACCAGGAAATGGTCAATCGTCATAGTCTCTGTCTGACTCATCTTCGGGAAGCGACAGAAGAAGCCGATTCTCTTCGCCAAGAAAATATTCACCTCAGAAGTATTAACCACGAGCTTAGCAAACACCTGAGCCTTCTGATCCACGCGTCGGTTCAGAAGCAGTACGGCTCCCATGATCAAGCTCCACCGTTAAGTTTCGTTGAGGGATTCCGCGGACTCAGTATCTCGGAGAAGGGAGGAAGCAGTTCCGCATGGGAAGATGTCTCCGATGAGAGTCCGACCAGCGTTATGGAGGGCGGAAGGGGAGTAGAGGGCGTTGAGGTGGAAAGGTTTTCCCTCCCTAAGAGCATCTCCGTCAGATCCAATGGATACCTGAAGATTGCTCAAGGCAGCGCCACCAGTCAGGGCGGAAAGCTCCGCGCCTCATCTCGTCCGAGAACGGCAAGTCCTGTTAAGGTCACGCAAAAGGTGTACGTGCAAGGAGTGAAAGAAGAAGAAAAGCCACTGGAACTGGAGGTGTACAACCAGGGCATGTTCAAAACGGAGCTGTGCAACAAATGGCAGGAAACAGGCAGCTGCCCATATGGAGACCACTGCCAATTTGCCCACGGAATAGAGGAGCTTCGCCCTGTGATCCGCCACCCCCGCTACAAGACTGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCGTATGGTCACCGCTGCCACTTCCGCCATGCCCTCACTGACCAGGAAAGGATGATGGGGTCACTGAAGCCCACCACCTGCAGGACCACCCCCAAGCTGGACAGGTGA | 1026 | 53.51 | MHKSSSSASKTMSSSSHLKSQLQTNDVYASLYNSPIFASKQSVPVSLPLTLYADSPQSASKSISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADSLRQENIHLRSINHELSKHLSLLIHASVQKQYGSHDQAPPLSFVEGFRGLSISEKGGSSSAWEDVSDESPTSVMEGGRGVEGVEVERFSLPKSISVRSNGYLKIAQGSATSQGGKLRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERMMGSLKPTTCRTTPKLDR | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 74610364 | 74614518 | - | Hsped.02g26860.1 | Hepe02g2686 | 564187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g2686 | 341 | ProSiteProfiles | Zinc finger C3H1-type profile. | 291 | 319 | IPR000571 | GO:0046872(InterPro) | |
Hepe02g2686 | 341 | Coils | Coil | 90 | 110 | - | - | |
Hepe02g2686 | 341 | SMART | c3hfinal6 | 291 | 318 | IPR000571 | GO:0046872(InterPro) | |
Hepe02g2686 | 341 | SMART | c3hfinal6 | 253 | 280 | IPR000571 | GO:0046872(InterPro) | |
Hepe02g2686 | 341 | ProSiteProfiles | Zinc finger C3H1-type profile. | 253 | 281 | IPR000571 | GO:0046872(InterPro) | |
Hepe02g2686 | 341 | FunFam | zinc finger CCCH domain-containing protein 15-like | 247 | 286 | - | - | |
Hepe02g2686 | 341 | SUPERFAMILY | CCCH zinc finger | 250 | 285 | IPR036855 | GO:0046872(InterPro) | |
Hepe02g2686 | 341 | Gene3D | - | 287 | 323 | - | - | |
Hepe02g2686 | 341 | Gene3D | - | 247 | 286 | - | - | |
Hepe02g2686 | 341 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 254 | 279 | IPR000571 | GO:0046872(InterPro) | |
Hepe02g2686 | 341 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 287 | 323 | - | - | |
Hepe02g2686 | 341 | MobiDBLite | consensus disorder prediction | 152 | 174 | - | - | |
Hepe02g2686 | 341 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 41 | 319 | IPR045877 | GO:0003729(InterPro) | |
Hepe02g2686 | 341 | SUPERFAMILY | CCCH zinc finger | 287 | 321 | IPR036855 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2686 | Hepe-Chr2:74610364 | Hepe02g3417 | Hepe-Chr2:83587565 | 6.55e-40 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55118 | PF00642 | zf-CCCH | 5.20E-12 | CL0537 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g2686 | K18753 | - | csv:101203274 | 580.867 |