Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2725 ATGCAAAGTTCAAACTTCACTTGCATATCATCAAGCGAGAGCGCGTGTTTGGAGGCTGATGAAGAAGGAGAAGACTCCATTTTCCTTTCACTCTGTCCTCCAGGCCAACGCCACTCAATTTCTTCCAAACATCCGCCCATTTGCCCTAATAACTCCTCTCTCCAAAACCCTAATATTATTCATCATCATCAAGATCATGCTGCTGTCACCGTCGCAATGCATATCGGCCCCCCTCCCATCTCCGCCGCCACCGCCACCGCCGCCGACTCAAACGACCTTGCTGCCGTCCGACCGGTTGACGGCCAGTACTGGATCCCTACGCCTGCCCAAATCCTTGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAGTCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAGACTTCCATGCTATTGCTGTGCAGAGGGTTGCAAAAACAACATAGATCATCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTTCAAACCCATTACAAGAGAAAGCATGGGGCAAAGCCCTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTTAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTAGGGCCTTTGGGGATGGCCATGCACCTCATACTGTCCAACTTTGTGACCTTGAAGAGGATGATTGGGATGATCATCATGATGATCATCAACATATAAATGCATCAAGTCAACCCTGGTCAATTTATCATTAA 873 47.42 MQSSNFTCISSSESACLEADEEGEDSIFLSLCPPGQRHSISSKHPPICPNNSSLQNPNIIHHHQDHAAVTVAMHIGPPPISAATATAADSNDLAAVRPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCDLEEDDWDDHHDDHQHINASSQPWSIYH 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 75570150 75571599 - Hsped.02g27250.1 Hepe02g2725 564226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2725 290 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Hepe02g2725 290 FunFam zinc finger protein WIP2-like 117 140 - -
Hepe02g2725 290 SUPERFAMILY beta-beta-alpha zinc fingers 114 140 IPR036236 -
Hepe02g2725 290 Gene3D Classic Zinc Finger 149 228 - -
Hepe02g2725 290 SUPERFAMILY beta-beta-alpha zinc fingers 186 223 IPR036236 -
Hepe02g2725 290 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 202 226 - -
Hepe02g2725 290 PANTHER ZINC FINGER PROTEIN WIP2 13 276 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Hepe02g2725 290 SMART c2h2final6 118 140 IPR013087 -
Hepe02g2725 290 SMART c2h2final6 203 223 IPR013087 -
Hepe02g2725 290 SMART c2h2final6 166 198 IPR013087 -
Hepe02g2725 290 Gene3D Classic Zinc Finger 117 140 - -
Hepe02g2725 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Hepe02g2725 290 FunFam Zinc finger protein WIP2 172 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2725 Hepe-Chr2:75570150 Hepe05g0565 Hepe-Chr5:7947960 1.72e-106 dispersed
Hepe02g2725 Hepe-Chr2:75570150 Hepe08g0113 Hepe-Chr8:959454 5.83e-107 transposed
Hepe02g2725 Hepe-Chr2:75570150 Hepe04g0273 Hepe-Chr4:46967259 9.84e-108 transposed
Hepe02g2725 Hepe-Chr2:75570150 Hepe04g0308 Hepe-Chr4:48818921 9.84e-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55125 PF00096 zf-C2H2 0.012 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2725 - - - 0.0