Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2727 ATGGACGACGATCAAAGCACCGCCAGTGACTCCACCTCCGTTTCTCCGGTCACCCCATTCCTCTTCAACCCATCTCCGTCGCCCACGGCGGAATCCCGAAAGCTTCCCTCTTCCCGTTTCAAAGGAGTCGTCCCTCAGCCCAACGGCCGATGGGGCGCCCAGATTTACGAGAAGCACCAAAGGGTCTGGCTCGGCACATTCAACGAAGAGCACCACGCCGCCAAAGCCTACGACATCGCCGCCCTTCGCTTCCGCGGCCGCGACGCCGTCACCAACTTCAAACCCGACTCCTCCTCCACCGCCGCCGTCGAAGAATCCGACTTCCTCAAATCCCACTCCAAGTTGGAGATCGTCGACATGCTCCGCAAACACACCTACAATGACGAGCTCCAGCAGAGCAAGCGCCACCACCGCGGTCCCACGGCAGCGGAGGAAACTCCCTCCCTCTCCGACGGCGATTCTGAACGGCGGGAGGTGCTGTTCGAGAAGAGCGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAACAGCACGCGGAGAAGAATTTTCCGTTGGGTTCCGACGACGGTGCGGCTTCGGCGAAAGGAATGCTTCTGAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGTTACTCGTATTGGAATAGCAGTCAAAGCTATGTGTTGACCAAAGGCTGGAGCCGGTTCGTCAAAGAGAAGACTCTCCGAGCCGGGGATGTGGTTCGCTTCCTCCGCTCGACCGGTCCGGACAAACAACTTTATATCGATGGAAAACCGACCACGGTTCAGATCGTGAAGCTTTTTGGAGTTAATATTTTGGAAGTGCCATTGTCGAAGAAGAGAGAGAGAGAAGGGGTATTATCGGAATTTCAACCTTCCAAGAACCAAAGAATAATCAAACCTTTGTAA 927 55.88 MDDDQSTASDSTSVSPVTPFLFNPSPSPTAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHHAAKAYDIAALRFRGRDAVTNFKPDSSSTAAVEESDFLKSHSKLEIVDMLRKHTYNDELQQSKRHHRGPTAAEETPSLSDGDSERREVLFEKSVTPSDVGKLNRLVIPKQHAEKNFPLGSDDGAASAKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDKQLYIDGKPTTVQIVKLFGVNILEVPLSKKREREGVLSEFQPSKNQRIIKPL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 75605957 75606883 - Hsped.02g27270.1 Hepe02g2727 564228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2727 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 266 IPR044800 GO:0003700(InterPro)
Hepe02g2727 308 SUPERFAMILY DNA-binding pseudobarrel domain 158 255 IPR015300 -
Hepe02g2727 308 FunFam AP2 domain-containing protein RAP2.8 38 95 - -
Hepe02g2727 308 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2727 308 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2727 308 CDD AP2 38 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2727 308 MobiDBLite consensus disorder prediction 7 34 - -
Hepe02g2727 308 Gene3D - 150 270 IPR015300 -
Hepe02g2727 308 SMART B3_2 161 265 IPR003340 GO:0003677(InterPro)
Hepe02g2727 308 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2727 308 MobiDBLite consensus disorder prediction 1 47 - -
Hepe02g2727 308 MobiDBLite consensus disorder prediction 130 156 - -
Hepe02g2727 308 Pfam B3 DNA binding domain 161 252 IPR003340 GO:0003677(InterPro)
Hepe02g2727 308 SMART rav1_2 39 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2727 308 SUPERFAMILY DNA-binding domain 38 94 IPR016177 GO:0003677(InterPro)
Hepe02g2727 308 ProSiteProfiles B3 DNA-binding domain profile. 161 265 IPR003340 GO:0003677(InterPro)
Hepe02g2727 308 CDD B3_DNA 160 249 IPR003340 GO:0003677(InterPro)
Hepe02g2727 308 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2727 Hepe-Chr2:75605957 Hepe03g0743 Hepe-Chr3:19841950 2.42e-43 dispersed
Hepe09g0587 Hepe-Chr9:5520619 Hepe02g2727 Hepe-Chr2:75605957 2.43e-55 transposed
Hepe09g1063 Hepe-Chr9:11362082 Hepe02g2727 Hepe-Chr2:75605957 4.80e-56 transposed
Hepe01g1220 Hepe-Chr1:77380913 Hepe02g2727 Hepe-Chr2:75605957 6.64e-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55126 PF02362 B3 8.70E-27 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2727 K09287 - csv:101206328 443.736