Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe02g2732 | ATGAAGGAGGAAGGAGAGTGTTTTCAAGGGTTTCAAGAGCAACTTCTTCTAATGCAACAATTCCAAACGATGCAACAAAACGGCGACGTTTTCGGTGTCGGTGTCGGTGTCGGTGTCGGTGGAGGAGGAGGAGGAGGAGGAGGGTTGATTTATCCTGATCATGTTTCTCCGATGATGTTTCCGCCACCGTGGACGGCGATGACAACCCTCCCTCAAGTCCACCACGACCCGTTTATCCCGCCGCCGCCGCCATCTTCCTACGCCAGCTTCTTCAACAGGAACAATAATCTTGGAATTGGGCAGATGGGTCAGGTTGGGTCTGTCCCATTTGGGCTGCAGGCGGAGCTGACCAAGATGACCGCTCAAGAAATAATGGATGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTAAGAAGCTTACTCCCAAGCACCACAAAAACCGACAAGGCATCGTTGCTAGCAGAAGTAATCCAACATGTGAAAGAGCTAAAACGACAGACGACATTGATAGCCGACGTAAGTCCAGTGCCGACCGAGCTCGACGAGCTATCGGTGGACGTCGACGCCTCGGATGAGGACGGGAAGTTTGTGATCAAAGCATCGCTTTGTTGCGAGGATAGGTCTGATCTTTTGCCACAGATCATCAAAACCCTGAAATCCCTTCGCCTGAGAACCCTAAAAGCGGAGATTACCACGCTCGGCGGCCGCGTAAAGAACGTCTTGTTCATCACCAGCGACGACGACTACTACTCGTCTTCATCAAGCGAGCAACAAGAGCCTCCACAGAACCACCACCAATACAGCATCAGCTCCATTCAGGAAGCCCTAAAGGCCGTTATGGAAAAGGTGTGTAGTAGTGAAGATCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACGAATAATAATCACAACAACAACAACATTAATATCATCGAACAACATCAACAACATCAACAACACAGGTCTCTCTAG | 1026 | 49.03 | MKEEGECFQGFQEQLLLMQQFQTMQQNGDVFGVGVGVGVGGGGGGGGGLIYPDHVSPMMFPPPWTAMTTLPQVHHDPFIPPPPPSSYASFFNRNNNLGIGQMGQVGSVPFGLQAELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITSDDDYYSSSSSEQQEPPQNHHQYSISSIQEALKAVMEKVCSSEDQSSSGSIKRQRTNNNHNNNNINIIEQHQQHQQHRSL | 341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 75742883 | 75745435 | - | Hsped.02g27320.1 | Hepe02g2732 | 564233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe02g2732 | 341 | CDD | bHLH_AtAIG1_like | 126 | 205 | - | - | |
| Hepe02g2732 | 341 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 135 | 185 | IPR036638 | GO:0046983(InterPro) | |
| Hepe02g2732 | 341 | Gene3D | - | 126 | 186 | IPR036638 | GO:0046983(InterPro) | |
| Hepe02g2732 | 341 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 131 | 180 | IPR011598 | GO:0046983(InterPro) | |
| Hepe02g2732 | 341 | SMART | finulus | 137 | 186 | IPR011598 | GO:0046983(InterPro) | |
| Hepe02g2732 | 341 | FunFam | transcription factor bHLH30 | 126 | 189 | - | - | |
| Hepe02g2732 | 341 | MobiDBLite | consensus disorder prediction | 304 | 324 | - | - | |
| Hepe02g2732 | 341 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 102 | 319 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Hepe02g2732 | 341 | Pfam | Helix-loop-helix DNA-binding domain | 134 | 181 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe02g2732 | Hepe-Chr2:75742883 | Hepe07g1874 | Hepe-Chr7:62254359 | 1.10e-35 | dispersed | |
| Hepe05g0856 | Hepe-Chr5:24791374 | Hepe02g2732 | Hepe-Chr2:75742883 | 9.78e-45 | transposed | |
| Hepe01g1224 | Hepe-Chr1:77463147 | Hepe02g2732 | Hepe-Chr2:75742883 | 1.05e-91 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 55127 | PF00010 | HLH | 1.60E-12 | No_clan | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe02g2732 | - | - | - | 0.0 |