Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2739 ATGGAGAGGGTTGTGCGAGTGATGTTGTCAGCTGCTTTTGTGGCAGCGTGGTCAGTTACTTCTGAAGCAGCTGGCTTACCTGGGTGCACAAGTTCATGTGGGAACTTGGAAATTCCATACCCATTTGGGATGAGCGAAGGGTGTTATCTGAATAGAAATTTCTCCATTACCTGCAACACAACTCATTATAATCCTCCAAAGCCATTTCTAATGACCAGCAACGTTGAAGTAAGCAATATATCCATCCTCGACGGCGAGCTTCACATCTTGCAGTACGTAGCCAAGGATTGCTACACAAAAGATGGTCCTAGCAACTCAAATGAACCCACTCTCACCGTCCCCATGTTTACCATTTCCAGCACCAAGAACAAGTTCACCGCCATCGGCTGCGATGCTGTCGCTTATCTTTACGGCGAACTGGAGGGCCAAACCTACACAAGTGGGTGCGTTGGGTGGTGTGAAAACGATAATATTACAAAAGTAAGAGAGGGTTCCTGCTCTGGAAATGGTTGCTGTCAGTTGGAGATTCCTAAAGGCCTCAAAAATTTGAGATTGGAGGTCAAAAGCTTCCATAATCACACTAAGGTGCTCCACTTCAATCCTTGTGGGTATGGTTTTGTAATACAACAAGACAACTTCAGTTTCTCCTCCAAATATATTCGCAATTTTCCACAAGAGCGAGTTCCGTTGGTGCTTGATTGGGGCATCACAAATGATACTTGCTTAACAGCTCACGACCAAACCAATTGCCTATGTGGACCAAACACCCAAAGGAATAGTAGCTTCTTGGATGATGGATCTGAATATCGTTGCCACTGCTTGAAAGGTTTCGAGGGGAATCCATATCTCCCTCAAGGATGTCAAAATATAAATGAATGCGAGAGAGATGGTCTCCATGATTGTCTTGACAGAGAACACTGTAACGACAGAGATGGAAACTATACTTGCTATTGTCCTAAGAACTATAAAGGAGATGGAAAACTTAAGGGAAAAGGTTGCACCAAAAACCCCAAGTCTTTCATTCACATCATCATTGGAATTGGTGTGGGGTTCATAGTTTTACTAATTGGTAGCACATGGTTGTCCTTGGGTTACAAAAAGTGGAAGTTCATCCAACGAAAAGAGAAGTTTTTCAAGAATAATGGAGGCTTCCTGCTTCAACAACATCTTTCACAGTGGCAATCATCTGTCGACACAGTCAGAATTTTCACCCAAGAAGAGCTGGAGAAGGCTACAAACAAGTTCGATGAAAGCACAGTGGCAGGAACAGGTGGTTTCGGCACTGTTTACAAAGGACTCTTAGACGACGGTTTGGCTGTCGCAATTAAGAAATCAAAAGTAGTGGACCAATCCCAAATTGACCAATTCATCAACGAAGTCATCGTTTTGTCCCAAATCAACCACCGACACGTTGTGAGGCTCCTAGGGTGCTGTTTGGAGACACAAGTCCCATTGTTGGTTTACGAGTTCATCACCAACGGCACACTCTTCGACCACATCCATGACAAAACCAAGCATGCATCTCTCACGTGGGAAGCTCGTTTGAAAATAGGTTCTGAAACTGCAGGTGTTCTTTCGTATTTGCATTCTTCTGCTTCTACTCCCATTATCCACAGGGATATCAAATCCACTAATATACTTTTAGACAATAATTACACTGCAAAGGTCTCTGATTTCGGTGCCTCGAAGTTGGTTCCAATGGATCAAACTCAGCTATCCACCATGGTGCAAGGGACTCTCGGATATTTGGACCCAGAATACTTGTTAACGAGTGAGCTGACGGAGAAGAGCGACGTGTACAGCTTTGGAATTGTGCTGATGGAGCTTATAAGTGGGAAGAAGGCTGTGTGTTTTGATGGACCTGAAGGAGAGAGGAATCTAGCCATGTACGTGCTGTGTGCGATGAAAGAAGATCGTTTGGAACAAGTTGTGGAGAATGGAATGGCAACAGAAGCAAACATTGAGCAGATAAAAGAAGTGGCAAAAGTAGCAAAAGAGTGTGTGAGAGTAAAAGGGGAGGAGCGACCAACCATGAGGGAGGTGGCTATGGAGCTAGAGGGACTGAGGGTGATGCAGATTCAGCATTCATGGGCTGACAACAATTTATCCCGACAAGAAGAGATGATTAGTTTATTGGATGAAACTTCAGAGTCGAACCAATTTGATGTCAGCCACCGTATCAATAATGCTATGGACAATAGCATAATGATTCAGGTTTTGACACATATCCCCGATGCAAGATGA 2244 44.03 MERVVRVMLSAAFVAAWSVTSEAAGLPGCTSSCGNLEIPYPFGMSEGCYLNRNFSITCNTTHYNPPKPFLMTSNVEVSNISILDGELHILQYVAKDCYTKDGPSNSNEPTLTVPMFTISSTKNKFTAIGCDAVAYLYGELEGQTYTSGCVGWCENDNITKVREGSCSGNGCCQLEIPKGLKNLRLEVKSFHNHTKVLHFNPCGYGFVIQQDNFSFSSKYIRNFPQERVPLVLDWGITNDTCLTAHDQTNCLCGPNTQRNSSFLDDGSEYRCHCLKGFEGNPYLPQGCQNINECERDGLHDCLDREHCNDRDGNYTCYCPKNYKGDGKLKGKGCTKNPKSFIHIIIGIGVGFIVLLIGSTWLSLGYKKWKFIQRKEKFFKNNGGFLLQQHLSQWQSSVDTVRIFTQEELEKATNKFDESTVAGTGGFGTVYKGLLDDGLAVAIKKSKVVDQSQIDQFINEVIVLSQINHRHVVRLLGCCLETQVPLLVYEFITNGTLFDHIHDKTKHASLTWEARLKIGSETAGVLSYLHSSASTPIIHRDIKSTNILLDNNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLMELISGKKAVCFDGPEGERNLAMYVLCAMKEDRLEQVVENGMATEANIEQIKEVAKVAKECVRVKGEERPTMREVAMELEGLRVMQIQHSWADNNLSRQEEMISLLDETSESNQFDVSHRINNAMDNSIMIQVLTHIPDAR 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 75889217 75892536 + Hsped.02g27390.1 Hepe02g2739 564240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2739 747 CDD STKc_IRAK 422 688 - -
Hepe02g2739 747 ProSitePatterns Calcium-binding EGF-like domain signature. 289 316 IPR018097 GO:0005509(InterPro)
Hepe02g2739 747 SMART serkin_6 415 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2739 747 ProSiteProfiles Protein kinase domain profile. 415 698 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2739 747 Gene3D Laminin 239 333 - -
Hepe02g2739 747 FunFam Wall-associated receptor kinase 2 385 490 - -
Hepe02g2739 747 Gene3D Transferase(Phosphotransferase) domain 1 491 710 - -
Hepe02g2739 747 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 703 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Hepe02g2739 747 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Hepe02g2739 747 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Hepe02g2739 747 FunFam Wall-associated receptor kinase 2 491 709 - -
Hepe02g2739 747 Pfam Protein tyrosine and serine/threonine kinase 421 685 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g2739 747 Gene3D Phosphorylase Kinase; domain 1 386 490 - -
Hepe02g2739 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g2739 747 Pfam Wall-associated receptor kinase galacturonan-binding 29 89 IPR025287 GO:0030247(InterPro)
Hepe02g2739 747 SMART egfca_6 289 334 IPR001881 GO:0005509(InterPro)
Hepe02g2739 747 SUPERFAMILY Protein kinase-like (PK-like) 393 686 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2382 Hepe-Chr1:88195313 Hepe02g2739 Hepe-Chr2:75889217 8.23e-64 dispersed
Hepe02g2739 Hepe-Chr2:75889217 Hepe03g0537 Hepe-Chr3:10085753 0.0 dispersed
Hepe02g2738 Hepe-Chr2:75877020 Hepe02g2739 Hepe-Chr2:75889217 0.0 tandem
Hepe02g2739 Hepe-Chr2:75889217 Hepe02g2740 Hepe-Chr2:75906938 2.59e-140 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72599 PF07714 PK_Tyr_Ser-Thr 4.70E-48 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2739 - - - 0.0