Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2756 ATGGCGGCGTTTGCGGCGGTGGCGGTGGTGTCGCTCTTTGCCTTTCACGGCAAGAACAGAAAGCTTTTCTGCGGCTTCGCTGCTTCCGTTTTTTCCATCATTATGTACGGCTCACCACTCTCCATAATGAAAACAGTGATAAAGACGAAGAGTGTTGAGTTCATGCCATTTTTCCTGTCGCTGTTCGTGTTCTTGTGCGGCACATCTTGGTTCATATACGGCCTTCTTGGCCAAGACCCTTTCGTTGCTGTTCCAAATGGTTTCGGGTGTGGGCTGGGTGCGCTCCAGCTGATTCTCTACTTCATCTACCGAGATCGCCAGGCCGGCCCAGATAAGAAGCCCATGAACGATGGGTCAAACATGGAGATGGGCCTGCAGAAGGCCCAATTAGAGAAGCCGCAGGCCACCGCAAAAGTGGACCGTGATGATCAAGTCTAA 438 52.05 MAAFAAVAVVSLFAFHGKNRKLFCGFAASVFSIIMYGSPLSIMKTVIKTKSVEFMPFFLSLFVFLCGTSWFIYGLLGQDPFVAVPNGFGCGLGALQLILYFIYRDRQAGPDKKPMNDGSNMEMGLQKAQLEKPQATAKVDRDDQV 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 76145215 76147902 - Hsped.02g27560.1 Hepe02g2756 564257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2756 145 PANTHER RAG1-ACTIVATING PROTEIN 1 2 105 IPR047664 GO:0008643(PANTHER)|GO:0016021(PANTHER)|GO:0051119(InterPro)|GO:0051119(PANTHER)
Hepe02g2756 145 FunFam Bidirectional sugar transporter SWEET 20 113 - -
Hepe02g2756 145 Pfam Sugar efflux transporter for intercellular exchange 25 107 IPR004316 GO:0016020(InterPro)
Hepe02g2756 145 Gene3D - 19 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2756 K15382 - - csv:101217779 239.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2756 Hepe-Chr2:76145215 Hepe09g1791 Hepe-Chr9:56273254 3.88e-26 dispersed
Hepe02g2756 Hepe-Chr2:76145215 Hepe06g0772 Hepe-Chr6:54337799 5.22e-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1201 . . . . . . . . Cmo04g02537 Cmo15g00636 . . . . Sed01g3508 . Cpe13g00661 Bhi04g01825 Tan11g1198 Cmetu03g0408 . Hepe02g2756 . Lcy10g1307 Cla08g00658 Cam08g1087 Cec08g0673 Cco08g0782 Clacu08g0793 . Cre08g0596 Cone4ag1453 Cone7ag1479 Cone17ag0801 . . . . Cme03g00418 . . . Bda13g01539 . Bpe14g00325 . Bma02g00285 . . . . . Car04g02334 Car15g00578 Cpe01g02096 . . . . . . . . . . . . . . . Lsi08g00517 . Chy03g00582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007853 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 36