Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2759 ATGCCTCGTCGCAGGAACGAAGATGACGACGACATTGACGCCGATGAGGAAGAGTATGAGGACGAAGAGGAGGAAGAGGAAGACCGGTCGACTAGGAAGCGGAGAAGATCAGATTTCATAGACGACGCTGCTGAGGAAGATGAGGATGAGGAGGAAGAAGAGGATGACGAGGACGAAGTTTATGGTGTCAATAGTCGGAGGCGGCGTGCCAAGAGGCCTAGCGGTTCTCAGTTTTTGGACATTGAGGCGGAGGTTGATACCGATGATGATGAAGAGGAGGACGACGCAGAGGACGACTTCATAGTTGATAATGCACCTGATGTACCCGATGATGATGATAATAGAAGGATGCATCGCCGCCCATTGCTACCGCGAGAAGATGAGGCGGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCAAGATATGCAAGGTCTAATCACATGGAATACGATGAGGAGACAACAGAAGTGGAGCAGCAAGCTCTTTTACCTTCTGTAAGGGATCCAAAATTATGGATGGTTAAATGCGCGATTGGCCGTGAACGAGAGGCTGCTGTTTGTCTTATGCAAAAATGCATTGATAAAGGGCCTGAAATGCAGATAAGATCTGCAGTTGCTCTTGATCATTTGAAGAATTTTATATATATTGAAGCCGACAAAGAGGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACCTATATGCACAAAAAATAATGCTTGTTCCAATTAAAGAAATGACTGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCCAGAGACACATGGGTGAGGATGAAGATTGGGACACATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGACAGAAGGTTACTGTGAAACTGATTCCAAGGATAGACCTACAGGCTCTTGCAAATAAATTGGAAGGTAAAGAAGTTGGTAAGAAGAAGGCATTTGTTCCTCCACCGCGTTTTATGAATATTGATGAAGCTAGAGAGTTGCATATCCGTGTAGAGCGCAGACGTGATCCCATTACCGGAGAATACTTTGAGAATATAGGTGGCAAGTTTTTCAAAGATGGTTTCTTGTATAAAACAGTGTCCATGAAGTCGATAAGTTCCCAAAACATAAAGCCAACTTTTGATGAACTTGAAAAGTTTCGAAAGCCTGGAGAAAATGGAGAGGGGGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTTAAGGGGGATCTAAAAAATTTGAAAGGATGGGTTGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCTAAAACTCTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGGAATCATGTAAAAGTTATATCGGGCACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGAGCAGCATGTGCTTATTATACTATCTGATACAACCAAGGAACATATCCGAGTATTTGCTGATGATGTTGTTGAGAGCTCCGAGGTAACAACTGGTGTGACGAAGATTGGGGATTATGAACTTCATGATCTTGTGTTATTGGACAATATGAGCTTTGGTGTAATTATACGTGTAGAAAGTGAGGCTTTTCAGGTTCTCAAGGGTATTCCTGATAGACCTGAGGTTGATATTGTAAAATTGAGGGAAATAAAAAGCAAGATCGACAAGAAAATCAGTGTTCAAGATCGGTTCAATAACACAATATCCTCCAAAGATGTAGTGAAGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCAGTGGAGCACATATACAGAGGAGTCCTGTTCATTTATGATCGCCATCACTTGGAACATGCAGGCTATATATGTGTTAAATCACAGTCTTGTATTGTTGTGGGTGGATCTCGATCTAATGGAAACAGAAATGGTAATTCATACTCTAGGCTTGCTGGCCTTGGGGCTCCACCTCGTTTTCCTCAGTCACCTAAGAGATTTCCCAGAGGAGGTCCCCGCAATGATACTGGGGGAAGACAGAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACAGTGAAAGTTCGGCAGGGTCCTTATAAGGGTTACCGTGGGCGTGTTGTTGAAATCAAAGGCCAAATGGTTCGAGTAGAGCTTGAGTCTCAAATGAAAGTTGTCACAGTTGATCGCACCTCTATCTCAGATAATGTGGCTGTTTCAACCCCCAATCGTGATGCATCTAGATATGGTATGGGAAGTGAAACTCCTATGCATCCTTCTCGAACTCCCCTGCATCCATACATGACCCCAATGAGAGATGTTGGAACAACACCAATTCATGATGGCATGAGGACACCTATGCGAGATCGAGCATGGAACCCATATGCACCCATGAGTCCGTCAAGGGATAACAACTGGGAGGAAGGGAACCCTGCAACATGGGGAGCGAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCACGAACTTACGAAGCTCCAACTCCTGGTTCTGGTTGGGCCAACACTCCTGGTGGCAGTTACAGTGATGCTGGTACCCCTCGGGATAGTGGTTCAGCCTATGCAAATGCTCCGAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCCATGACACCGAATTCAGCATCCTATCTTCCCGGCACTCCTGGTGGGCAGCCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATACCGAAGGACCATGGTACGTGCCAGACATATTGGTCAATGTTCGGAGGTCAGGAGATGATCTCGTCATGGGAGTAATCCGTGAGGTGCTTCCGGATGGCGCATGTAGGGTCGGTCTCGGGTCAAATGGCAATGGTGAAACGGTAACAGCTCCTCCTACCGATATAGAAGTCATTGTACCGAGGAAGTCCGACAAGATTAAAATAATGGGTGGTGCTTTGCGAGGTGCCACGGGAAAATTGATCGGTGTAGATGGCACCGATGGAATTGTCAAGGTAGATGATACGTTAGACGTTAAGATTTTGGATTTAGTTATTCTTGCAAAACTAGCTCAACCATGA 3099 45.53 MPRRRNEDDDDIDADEEEYEDEEEEEEDRSTRKRRRSDFIDDAAEEDEDEEEEEDDEDEVYGVNSRRRRAKRPSGSQFLDIEAEVDTDDDEEEDDAEDDFIVDNAPDVPDDDDNRRMHRRPLLPREDEAEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGPEMQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNLYAQKIMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTHKGDLAKVVDVDNVRQKVTVKLIPRIDLQALANKLEGKEVGKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGKFFKDGFLYKTVSMKSISSQNIKPTFDELEKFRKPGENGEGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVISGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVKILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGYICVKSQSCIVVGGSRSNGNRNGNSYSRLAGLGAPPRFPQSPKRFPRGGPRNDTGGRQRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQMVRVELESQMKVVTVDRTSISDNVAVSTPNRDASRYGMGSETPMHPSRTPLHPYMTPMRDVGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNNWEEGNPATWGASPQYQPGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYVPDILVNVRRSGDDLVMGVIREVLPDGACRVGLGSNGNGETVTAPPTDIEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 76181824 76191629 + Hsped.02g27590.1 Hepe02g2759 564260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 27 41 - -
Hepe02g2759 1032 FunFam Transcription elongation factor SPT5 467 516 - -
Hepe02g2759 1032 SMART nusgn_4 169 255 IPR006645 GO:0006354(InterPro)|GO:0140673(InterPro)
Hepe02g2759 1032 CDD KOW_Spt5_3 464 514 IPR041976 -
Hepe02g2759 1032 CDD KOW_Spt5_2 413 463 IPR041975 -
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 10 26 - -
Hepe02g2759 1032 CDD NGN_Euk 171 253 IPR039385 -
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 747 907 - -
Hepe02g2759 1032 SUPERFAMILY Translation proteins SH3-like domain 456 515 IPR008991 -
Hepe02g2759 1032 FunFam Transcription elongation factor SPT5 681 745 - -
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 42 59 - -
Hepe02g2759 1032 PIRSF Spt5 2 1032 IPR017071 GO:0006357(InterPro)|GO:0032784(InterPro)
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 883 897 - -
Hepe02g2759 1032 Pfam Spt5 transcription elongation factor, acidic N-terminal 78 165 IPR022581 -
Hepe02g2759 1032 ProSitePatterns Ribosomal protein L24 signature. 416 433 IPR005825 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hepe02g2759 1032 Gene3D - 467 516 IPR014722 -
Hepe02g2759 1032 SMART kow_9 412 439 IPR005824 -
Hepe02g2759 1032 SMART kow_9 979 1006 IPR005824 -
Hepe02g2759 1032 SMART kow_9 695 722 IPR005824 -
Hepe02g2759 1032 SMART kow_9 588 615 IPR005824 -
Hepe02g2759 1032 SMART kow_9 464 491 IPR005824 -
Hepe02g2759 1032 SMART kow_9 260 287 IPR005824 -
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 645 700 - -
Hepe02g2759 1032 Gene3D - 407 464 IPR014722 -
Hepe02g2759 1032 FunFam Transcription elongation factor SPT5 407 464 - -
Hepe02g2759 1032 CDD KOW_Spt5_6 974 1030 IPR041980 -
Hepe02g2759 1032 Coils Coil 5 36 - -
Hepe02g2759 1032 Gene3D - 680 745 IPR014722 -
Hepe02g2759 1032 Gene3D - 260 302 IPR014722 -
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 1 120 - -
Hepe02g2759 1032 FunFam Transcription elongation factor SPT5 260 302 - -
Hepe02g2759 1032 CDD KOW_Spt5_4 592 634 IPR041977 -
Hepe02g2759 1032 Pfam Early transcription elongation factor of RNA pol II, NGN section 171 252 IPR005100 -
Hepe02g2759 1032 Pfam KOW motif 698 729 IPR005824 -
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 807 874 - -
Hepe02g2759 1032 FunFam Transcription elongation factor SPT5 151 253 - -
Hepe02g2759 1032 CDD KOW_Spt5_5 693 743 IPR041978 -
Hepe02g2759 1032 CDD KOW_Spt5_1 264 301 IPR041973 -
Hepe02g2759 1032 Gene3D - 151 253 IPR036735 GO:0006354(InterPro)
Hepe02g2759 1032 MobiDBLite consensus disorder prediction 82 107 - -
Hepe02g2759 1032 PANTHER SUPPRESSOR OF TY 5 64 1022 IPR039659 GO:0003729(PANTHER)|GO:0006357(InterPro)|GO:0006368(PANTHER)|GO:0032044(PANTHER)|GO:0032784(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2759 K15172 - - csv:101204562 1816.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2759 Hepe-Chr2:76181824 Hepe05g1456 Hepe-Chr5:63888775 0.0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39