Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2765 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAAACTTCTAGAGGAGGAGACATTGAGCTAGGAAATGCTCCTACTAATGCAGGGGATCTGGGCTTGGAGGATTTCTTTAAAAAGGTCCAAGATATTGAAAAACAGAATGAGAAGCTGGATAAGCTACTAAAAAAACTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACTAAAGCTCCTGCAATGAAAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTCTGAAGGCCAAAGTCGAAGAACTCGACAAAGAGAATCTGGCAAATAGGCAGAGGCCTGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTGAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGGTTTTACGTGAAAAAATCCAACAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGATGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTAGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTAGATGCACAAGGGGATATGCTTGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAACGGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTACTCGTTGTTGTGGTCGTAGTTGTGGGAGTTCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA 924 43.61 MNDLLSDSFEIPRGQTSRGGDIELGNAPTNAGDLGLEDFFKKVQDIEKQNEKLDKLLKKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFLKAKVEELDKENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQVLREKIQQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQRNSRKWMCIAIIILLLVVVVVVVGVLKPWNNGKGA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 76232596 76250371 - Hsped.02g27650.1 Hepe02g2765 564266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2765 307 Gene3D - 196 299 - -
Hepe02g2765 307 PANTHER SYNTAXIN 38 286 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe02g2765 307 Coils Coil 36 70 - -
Hepe02g2765 307 SMART tSNARE_6 201 268 IPR000727 -
Hepe02g2765 307 FunFam Syntaxin 132 199 299 - -
Hepe02g2765 307 Coils Coil 135 155 - -
Hepe02g2765 307 Coils Coil 87 107 - -
Hepe02g2765 307 CDD SNARE_syntaxin1-like 205 267 - -
Hepe02g2765 307 Coils Coil 209 229 - -
Hepe02g2765 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Hepe02g2765 307 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
Hepe02g2765 307 FunFam Syntaxin 132 31 160 - -
Hepe02g2765 307 Pfam Syntaxin 38 241 IPR006011 GO:0016020(InterPro)
Hepe02g2765 307 MobiDBLite consensus disorder prediction 1 28 - -
Hepe02g2765 307 Pfam SNARE domain 242 294 IPR000727 -
Hepe02g2765 307 Gene3D - 33 160 - -
Hepe02g2765 307 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe02g2765 307 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Hepe02g2765 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2765 Hepe-Chr2:76232596 Hepe08g0474 Hepe-Chr8:4173033 2.88e-100 dispersed
Hepe02g2765 Hepe-Chr2:76232596 Hepe04g1076 Hepe-Chr4:65401673 3.31e-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2765 K08486 - csv:101203075 480.715