Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2790 ATGATGGATTTGAACTTCACCGCCAGGAAACCGCCGCATACGGCGGTGAGGATGGAAATGATAGAACAGATGCCGGAGGCACCACAGCGCGGCTACCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTAGCTAATTTCGACGATCTTCTCCTCTTCGACCCTCCCGACCTCGATTTATCATCTCCCCTTCCTTCTCCATCGCCGTCGCCCTCTCCGACGCCGGCGGGGGCTCATATGGCCGTCGATTCCCCTGAAGACGCTTCTGCCTCGAAACCTAGGGCTGGTAGCGGTAACGGTAACTCCGCTTCCTTCTTCGGCGCTCACTGCCGGAGCTTATCGATGGATTCCGACTTCTTCGACGGCTTGGGGATGGCCGGAGATGGCAGCGACGGTGAGGTACTTGGCGGGAAGATGAGTCGCCATAGGCATAGCAATTCCATGGATGGCTCTTTGACCTCCTCGTTTGAAGCTGATTCCACCGTCGGAATTGATTACTCTAAGAAGGCCATGGCGCCTGATAAACTCGCTGAACTTGCTTTGATGGATCCTAAAAGAGCTAAGAGGATTCTGGCGAATAGACAATCTGCTGCACGGTCCAAGGAGAGGAAAATCCGTTACACAAACGAATTAGAGAAGAAAGTGCAGATGCTTCAGTCAGAAGCGACTTCCCTTTCTGCACAAGTCACAGTGTTTCAGAGAGATACCACTGGATTGACTACTGAGAATAGAGAACTCAAGCTAAGGCTGCAAGCCATGGAGCAGCAAGCCCATCTAAGAGATGCTCTGAATGAGACACTGAGGGAGGAAGTGCAGCGGCTTAAGATAGCTGCTGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACTTTGGAGGGCTGCCCCCTCAATTCCCTCCTCTCCAGCCATCCTTGCTTCAATTTGGAAACTCCCAGAATCATCAACAGCAACAGCTGCTTCACATGTCTCAGCCTGATGCCCGAGGAGGAGAGTCTTCGCCGTCCCAGCTTCCCGGAGCTTAA 1026 53.31 MMDLNFTARKPPHTAVRMEMIEQMPEAPQRGYHHRRSHSDTSFRLANFDDLLLFDPPDLDLSSPLPSPSPSPSPTPAGAHMAVDSPEDASASKPRAGSGNGNSASFFGAHCRSLSMDSDFFDGLGMAGDGSDGEVLGGKMSRHRHSNSMDGSLTSSFEADSTVGIDYSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVFQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLREEVQRLKIAAAQLPVANGNSFNFGGLPPQFPPLQPSLLQFGNSQNHQQQQLLHMSQPDARGGESSPSQLPGA 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 76820424 76822658 - Hsped.02g27900.1 Hepe02g2790 564291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2790 341 Gene3D - 185 238 - -
Hepe02g2790 341 Pfam bZIP transcription factor 186 231 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2790 341 MobiDBLite consensus disorder prediction 59 100 - -
Hepe02g2790 341 FunFam Transcription factor VIP1 185 238 - -
Hepe02g2790 341 SUPERFAMILY Leucine zipper domain 186 237 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2790 341 MobiDBLite consensus disorder prediction 135 155 - -
Hepe02g2790 341 Coils Coil 261 281 - -
Hepe02g2790 341 CDD bZIP_plant_RF2 187 236 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2790 341 MobiDBLite consensus disorder prediction 295 341 - -
Hepe02g2790 341 Coils Coil 209 229 - -
Hepe02g2790 341 Coils Coil 237 257 - -
Hepe02g2790 341 SMART brlzneu 182 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2790 341 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 21 322 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe02g2790 341 MobiDBLite consensus disorder prediction 61 75 - -
Hepe02g2790 341 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g2790 341 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2790 Hepe-Chr2:76820424 Hepe10g1972 Hepe-Chr10:56752364 2.18e-88 dispersed
Hepe02g2790 Hepe-Chr2:76820424 Hepe10g1387 Hepe-Chr10:50227677 1.11e-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55131 PF00170 bZIP_1 7.20E-07 CL0018 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2790 K20557 - csv:101215277 395.201