Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2796 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCTGGCCATTCCAGGGGGAAATCTCATGGACCGGTTCATGAGTTTAATGATGAACCTCTGCTACTACAGACTAGCCGCTGGGCTAGCCTTCCACCCGAGTTATTATGTGATGTGGTCCGGAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATTGTCAAAAGTCCCGAGTTCACCGGGAAAATTACCTTCCCCGTCGCCTTGAAGCAGCCTGGGTCGCGTGATGGTACTATTCAATGCTTTATCAAGAGGAATAAATCTAACTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGTGGACGATATATCGAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAGCCTCCTTACAACAACAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTTTCTCCAAAGGTCCCCGCTGGAAGCTACAGCATTGCACAGATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGCACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCTGTTCCGGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTCCGAAGCATTTCATTCTCCAAGTCAATCGATCATTCCACTGAGTTCAGCAGTTCCCGGTTCTCCGATGTTGCGGGAATGCTTGTTGATGAAGATGGCGAGGTGAAGGATCAACCCTTGGTTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATTGCTGCAACCTCACCTGCTGCAGAGGCGCCAGTACCGTCGCAGCCACCTCCCCAGCCGGCCCAACCTACCCATTCGGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG 1299 48.04 MSFRSILRDVRDGFGSLSRRSFEVRLPGHSRGKSHGPVHEFNDEPLLLQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFTGKITFPVALKQPGSRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAVDDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNNNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGEVKDQPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 76933994 76938698 + Hsped.02g27960.1 Hepe02g2796 564297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2796 432 CDD F-box_AtTLP-like 53 97 - -
Hepe02g2796 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Hepe02g2796 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Hepe02g2796 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Hepe02g2796 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Hepe02g2796 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Hepe02g2796 432 PANTHER TUBBY-RELATED 45 431 - -
Hepe02g2796 432 MobiDBLite consensus disorder prediction 368 388 - -
Hepe02g2796 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Hepe02g2796 432 Pfam Tub family 114 427 IPR000007 -
Hepe02g2796 432 FunFam Tubby-like F-box protein 110 432 - -
Hepe02g2796 432 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Hepe02g2796 432 Gene3D - 48 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2796 K19600 - - csv:101203074 836.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2796 Hepe-Chr2:76933994 Hepe10g1960 Hepe-Chr10:56548708 4.31e-251 dispersed
Hepe02g2796 Hepe-Chr2:76933994 Hepe03g0129 Hepe-Chr3:1546333 4.73e-147 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT1G76900 71.6 3.6e-174 608.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G76900 70.6 2.4e-170 595.5
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT1G76900 68.2 5.6e-167 584.3
Hepe03g0129 . 13 387 TUB Transcription Factor Family AT1G76900 50.8 1.2e-113 407.1
Hepe05g1485 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 5.2e-112 401.7
Hepe07g0479 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 6.3e-102 367.5
Hepe02g2796 . 176 432 TUB Transcription Factor Family AT1G25280 69.9 4.1e-93 338.2
Hepe10g1960 . 173 430 TUB Transcription Factor Family AT1G25280 67.5 9.2e-93 337.0
Hepe07g0731 . 209 445 TUB Transcription Factor Family AT1G25280 55.8 2.9e-70 262.3
Hepe05g1485 . 154 387 TUB Transcription Factor Family AT1G25280 52.4 9.2e-69 257.3
Hepe03g0129 . 155 387 TUB Transcription Factor Family AT1G25280 53.9 1.2e-68 256.9
Hepe01g1672 . 181 408 TUB Transcription Factor Family AT1G25280 52.7 3.3e-66 248.8
Hepe04g1521 . 176 412 TUB Transcription Factor Family AT1G25280 52.8 1.2e-65 246.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT5G18680 62.5 4.3e-99 358.2
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT5G18680 61.5 1.2e-96 350.1
Hepe10g1960 . 112 430 TUB Transcription Factor Family AT5G18680 53.3 3.5e-85 312.0
Hepe02g2796 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 1.2e-82 303.5
Hepe07g0479 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 2.1e-82 302.8
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT5G18680 52.8 2.4e-78 289.3
Hepe01g1672 . 117 408 TUB Transcription Factor Family AT5G18680 50.3 5.6e-75 278.1
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G18280 58.3 3.0e-140 495.4
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G18280 61.5 5.6e-139 491.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G18280 57.1 9.0e-121 430.6
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.2e-118 421.8
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 6.7e-116 414.5
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 6.7e-116 414.5
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G18280 53.2 9.6e-115 410.6
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 9.0e-113 404.1
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G18280 52.0 3.6e-93 339.0
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G47900 68.5 3.5e-160 561.6
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G47900 68.0 4.6e-160 561.2
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G47900 55.2 2.4e-132 469.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G47900 55.9 2.4e-129 459.1
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G47900 54.3 4.6e-120 428.3
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G47900 51.5 2.8e-117 419.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G47900 55.3 3.1e-116 415.6
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G47900 51.2 3.4e-99 359.0
Hepe03g1679 . 82 307 TUB Transcription Factor Family AT1G16070 59.1 8.3e-71 264.2
Hepe07g0479 . 66 428 TUB Transcription Factor Family AT1G43640 67.5 4.4e-146 514.6
Hepe10g1960 . 67 430 TUB Transcription Factor Family AT1G43640 69.7 5.7e-146 514.2
Hepe02g2796 . 65 432 TUB Transcription Factor Family AT1G43640 65.5 6.1e-140 494.2
Hepe03g0129 . 48 387 TUB Transcription Factor Family AT1G43640 52.6 4.0e-107 385.2
Hepe05g1485 . 49 387 TUB Transcription Factor Family AT1G43640 52.7 4.1e-104 375.2
Hepe01g1672 . 70 408 TUB Transcription Factor Family AT1G43640 50.7 6.2e-100 361.3
Hepe01g1672 . 34 408 TUB Transcription Factor Family AT1G47270 63.1 3.5e-133 471.9
Hepe04g1521 . 33 412 TUB Transcription Factor Family AT1G47270 59.2 4.5e-125 444.9
Hepe07g0731 . 35 445 TUB Transcription Factor Family AT1G47270 54.0 2.0e-117 419.5
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 7.3e-115 411.0
Hepe02g2796 . 48 432 TUB Transcription Factor Family AT1G47270 54.3 2.9e-111 399.1
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT1G47270 50.2 7.8e-109 391.0
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT1G47270 50.7 2.6e-104 375.9
Hepe07g0976 . 1 386 TUB Transcription Factor Family AT1G53320 72.0 2.0e-157 552.4
Hepe05g1485 . 33 387 TUB Transcription Factor Family AT1G53320 50.8 4.6e-98 355.1
Hepe07g0479 . 54 428 TUB Transcription Factor Family AT1G53320 50.3 1.6e-95 346.7
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT3G06380 63.1 6.6e-97 350.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT3G06380 63.1 1.8e-94 342.8
Hepe07g0479 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 2.1e-82 302.8
Hepe02g2796 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 7.4e-80 294.3
Hepe10g1960 . 116 430 TUB Transcription Factor Family AT3G06380 50.2 6.2e-79 291.2
Hepe04g1521 . 118 412 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe01g1672 . 121 408 TUB Transcription Factor Family AT3G06380 51.4 1.7e-76 283.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55133 PF01167 Tub 4.90E-115 CL0395 Hepe TF