Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2796 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCTGGCCATTCCAGGGGGAAATCTCATGGACCGGTTCATGAGTTTAATGATGAACCTCTGCTACTACAGACTAGCCGCTGGGCTAGCCTTCCACCCGAGTTATTATGTGATGTGGTCCGGAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATTGTCAAAAGTCCCGAGTTCACCGGGAAAATTACCTTCCCCGTCGCCTTGAAGCAGCCTGGGTCGCGTGATGGTACTATTCAATGCTTTATCAAGAGGAATAAATCTAACTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGTGGACGATATATCGAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAGCCTCCTTACAACAACAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTTTCTCCAAAGGTCCCCGCTGGAAGCTACAGCATTGCACAGATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGCACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCTGTTCCGGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTCCGAAGCATTTCATTCTCCAAGTCAATCGATCATTCCACTGAGTTCAGCAGTTCCCGGTTCTCCGATGTTGCGGGAATGCTTGTTGATGAAGATGGCGAGGTGAAGGATCAACCCTTGGTTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATTGCTGCAACCTCACCTGCTGCAGAGGCGCCAGTACCGTCGCAGCCACCTCCCCAGCCGGCCCAACCTACCCATTCGGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG 1299 48.04 MSFRSILRDVRDGFGSLSRRSFEVRLPGHSRGKSHGPVHEFNDEPLLLQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFTGKITFPVALKQPGSRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAVDDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNNNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGEVKDQPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 76933994 76938698 + Hsped.02g27960.1 Hepe02g2796 564297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2796 432 CDD F-box_AtTLP-like 53 97 - -
Hepe02g2796 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Hepe02g2796 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Hepe02g2796 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Hepe02g2796 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Hepe02g2796 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Hepe02g2796 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Hepe02g2796 432 PANTHER TUBBY-RELATED 45 431 - -
Hepe02g2796 432 MobiDBLite consensus disorder prediction 368 388 - -
Hepe02g2796 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Hepe02g2796 432 Pfam Tub family 114 427 IPR000007 -
Hepe02g2796 432 FunFam Tubby-like F-box protein 110 432 - -
Hepe02g2796 432 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Hepe02g2796 432 Gene3D - 48 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2796 Hepe-Chr2:76933994 Hepe10g1960 Hepe-Chr10:56548708 4.31e-251 dispersed
Hepe02g2796 Hepe-Chr2:76933994 Hepe03g0129 Hepe-Chr3:1546333 4.73e-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55133 PF01167 Tub 4.90E-115 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2796 K19600 - csv:101203074 836.254