Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g2796 | ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCTGGCCATTCCAGGGGGAAATCTCATGGACCGGTTCATGAGTTTAATGATGAACCTCTGCTACTACAGACTAGCCGCTGGGCTAGCCTTCCACCCGAGTTATTATGTGATGTGGTCCGGAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATTGTCAAAAGTCCCGAGTTCACCGGGAAAATTACCTTCCCCGTCGCCTTGAAGCAGCCTGGGTCGCGTGATGGTACTATTCAATGCTTTATCAAGAGGAATAAATCTAACTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGTGGACGATATATCGAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAGCCTCCTTACAACAACAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTTTCTCCAAAGGTCCCCGCTGGAAGCTACAGCATTGCACAGATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGCACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCTGTTCCGGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTCCGAAGCATTTCATTCTCCAAGTCAATCGATCATTCCACTGAGTTCAGCAGTTCCCGGTTCTCCGATGTTGCGGGAATGCTTGTTGATGAAGATGGCGAGGTGAAGGATCAACCCTTGGTTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATTGCTGCAACCTCACCTGCTGCAGAGGCGCCAGTACCGTCGCAGCCACCTCCCCAGCCGGCCCAACCTACCCATTCGGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG | 1299 | 48.04 | MSFRSILRDVRDGFGSLSRRSFEVRLPGHSRGKSHGPVHEFNDEPLLLQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFTGKITFPVALKQPGSRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAVDDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNNNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGEVKDQPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 76933994 | 76938698 | + | Hsped.02g27960.1 | Hepe02g2796 | 564297 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g2796 | 432 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Hepe02g2796 | 432 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - | |
Hepe02g2796 | 432 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 432 | IPR025659 | - | |
Hepe02g2796 | 432 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515(InterPro) | |
Hepe02g2796 | 432 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
Hepe02g2796 | 432 | PRINTS | Tubby superfamily signature | 389 | 408 | IPR000007 | - | |
Hepe02g2796 | 432 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Hepe02g2796 | 432 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Hepe02g2796 | 432 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Hepe02g2796 | 432 | PRINTS | Tubby superfamily signature | 410 | 432 | IPR000007 | - | |
Hepe02g2796 | 432 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Hepe02g2796 | 432 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Hepe02g2796 | 432 | PANTHER | TUBBY-RELATED | 45 | 431 | - | - | |
Hepe02g2796 | 432 | MobiDBLite | consensus disorder prediction | 368 | 388 | - | - | |
Hepe02g2796 | 432 | ProSitePatterns | Tub family signature 2. | 417 | 432 | IPR018066 | - | |
Hepe02g2796 | 432 | Pfam | Tub family | 114 | 427 | IPR000007 | - | |
Hepe02g2796 | 432 | FunFam | Tubby-like F-box protein | 110 | 432 | - | - | |
Hepe02g2796 | 432 | Gene3D | Tubby Protein; Chain A | 112 | 426 | IPR025659 | - | |
Hepe02g2796 | 432 | Gene3D | - | 48 | 101 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2796 | Hepe-Chr2:76933994 | Hepe10g1960 | Hepe-Chr10:56548708 | 4.31e-251 | dispersed | |
Hepe02g2796 | Hepe-Chr2:76933994 | Hepe03g0129 | Hepe-Chr3:1546333 | 4.73e-147 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55133 | PF01167 | Tub | 4.90E-115 | CL0395 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g2796 | K19600 | - | csv:101203074 | 836.254 |