Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2812 ATGGTTAGTTCACCTGAAAGGTGGATAGATCGTCTCCAGCTTTCGTCCTTGTTTTGGACCCCGCCTCGAGATGAGCAACATAGAAAGGCTGAACTCACTACGTATGTCGAGTGCTTGGGTCAGTTCACATCAGAACAATTTCCGGAGGATATTGCAGAGTTAATACGTAGCCATTATCCTTGGAAGGGAAAGCGCCTTATTGATGATGTTTTGGCAACGTTTGTTCTTCATCATCCGGAGCACGGGCATGCCGTCATTCTTCCAATTATTTCTTGTATTATTGATGGTACAATAGCGTATAGCAAGAGTGGTTCTCCCTTTTCGTCTTTCATATCCTTATTCTGCCCGGACACAGAGCATGATTATTCTGAACAGTGGGCTCTGGCATGTGGTGAGATCTTGAGAATATTGACTCATTATAATCGTCCCATATATAAGACGGAACAACAAAATATGGAAGGAGAAAGAAGTGGTGGTGACAACCACGCAACAACTAGTGACTCAAGTAATGTGCCACCCAGCCAGACACCCTTGAATCAGGACAGGAAGCCCTTAAGGCCCCTATCTCCATGGATTACTGACATATTGCTTGCGGCACCTCTAGGCATCAGAAGCGACTACTTCCGTTGGTGTAGTGGCGTAATGGGTAAATATGCCGCCGGAGAACTAAAGCCACCTACAACTGCTACGTCTCGTGGGTCTGGAAAGCATCCGCAACTTGTACCATCAACTCCAAGATGGGCTGTTGCTAATGGTGCTGGTGTTATATTAAGTGTATGTGATGAAGAAGTTGCTCGTTATGAGACTGCCACTTTAACGGCAGCAGCTGTTCCTGCACTTCTACTTCCTCCACCAACTACAGCCTTGGATGAGCATCTCGTTGCTGGGCTGCCTGCTTTGGAGCCTTATGCACGTTTATTTCACAGGTATTATGCTATTGCTACACCAAGTGCTACGCAAAGACTTCTTCTTGGGCTTTTAGAAGCACCTCCTTCATGGGCTCCTGATGCACTTGATGCAGCTGTTCAGCTTGTAGAGCTTCTTCGTGCTGCTGAAGACTACGCTTCTGGAATAAGACTTCCTAGGAACTGGATGCATTTGCATTTCTTACGTGCCATAGGAACTGCAATGTCAATGCGAGTAGGCATTGCTGCTGACGCTGCAGCAGCGTTACTTTTCCGCATACTCTCCCAGCCTGCATTGCTTTTCCCTCCTTTGAGGCAAGTTGAGGGAACTGAGGTTCAACAGGAACCATTGGGTGATTATATATCGTCCTACCAGAGACAGATAGAAATGCCAGCAGCAGAAGCAACAATTGAAGCAACTGCCCAAGGGATTGCATCCATGATTTGTGCCCATGGCCTGGAAGTTGAATGGAGAATCTGTACCATTTGGGAAGCTGCTTATGGCTTGATTCCGCTAAGTTCTTCTGCAGTTGATCTTCCAGAACTTGTTGTTGCAACGCCACTACAACCTCCCCTATTATCTTGGAATCTGTACATACCACTTCTTAAGGTCCTCGAATATCTTCCTCGTGGCAGTCCATCTGAAGCATGTCTGATGAAGATATTTGTTGCTACCGTAGAAGCAATTCTTCAAAGAGCGTTTCCATCTGAGTCTTCAACAGAGCGTACAAGGAAACTCAATTATTTTTCTGGAATTGGCTATGCCTCTAAAAACCTTTCTCTATCAGAGCTCCGGATGATGATTCACTCTCTTTTCTTAGAATCGTGTGCATCTGAAGAGCTTGCTTCACGTTTACTTTTTATTGTGTTAACTGTTTGTGTTAGTCACGAAGCTCAATCAAACGGGAGAAAGAGAAGAAGAAGTGATAATAGTAATTTTCAGGAAGAAAGGGTCGAGCCAAATCAAGACGTGTCCAGTGAAAGAAGAGAAACAAAACGCAAAATGAGTAAACAAGGACCAGTATCAGCTTTTGATTCTTATGTTCTTGCTGCTGTTTGTGCTCTTGCTTGTGAACTACAACTGTTTCCATTGATGTCACGGGGAGGGAAGCATTTGAGTTTTAAAGGTTTGCAAGATGTTGCCAAGTTAGTCAAAATAAATGGATCTTCTTTGGAAATTCAAAGTAGTATTGACTCGGCAGTTCGCCATACTCATAGAATCTTATCAATTTTGGAGGCTCTCTTTTCTCTGAAGCCCTCATCTCTTGGAACATCCTGGAGTTACAGTTCAAATGAAATAGTTGCTGCAGCTATGGTTGCTGCTCATGTTTCAGAACTATTTCGACAGTCAAGAGCTTGCATGCATGCGCTCTCTGTTTTGATGCGGTGCAAGTGGGATGAAGAAATTTACACCAGGGCTTCATCACTATACAACCTCATCGATATCCATAGCAAAGCTGTTGCGTCTATTGTCAACAGGGCGGAGCCATTAGAAGTGCACTTAGTGGCTGCACCAAATTCTGAATACTCTCGTGTGTCTTCAGCAGACCGAAGGCCAGCTGAACATGATGACCATGTCTACGCCGAGAATGGACAGCAATCTATCCCTAAATGTGAAGAGCCATGCCATGTTAGAGCGAAACCTTCATATGAAAGAGAATCAGATTCAAATGTTGACACGGAAAATACGTTGGGCAAACGTATAGCGAGTTTCCAGTTAGATGCTTCTGAACTAGCAAATTTTCTTACAATTGATAGGCATATAGGATTCAATGGATGTGCACCAATTCTTTTGAGATCAGTGCTGGCTGAGAAGCAAGAGTTATGTTTCTCTGTTGTTTCACTTTTATGGCACAAGTTAATTGCGACACCCGAAATTCAACCTAGTGCGGAAGGCACATCTGCTCAACAGGGATGGAGACAGGTAGTTGATGCACTATGCAATGTTGTATCGGCATCACCAGCAAAAGCAGCTGCAGCTGTTGTACTCCAGGCTGATAGAGAATTCCAGCCATGGATTGCTAAAGATGATAACCAAGGCCAGAAGATGTGGAGAATCAACCAGCGGATCATTCAATTGATTGTCGAACTCATGAGAAATCATGATACACCGGAATCATTAGTAACTTTAGCAAACGCGTCCGACCTTCTTTTACGTGCTACAGATGGAATGCTGGTAGACGGAGAAGCTTGCACTTTGCCCCAACTGGAGCTCCTAGAAGCAACAGCTCGAGCAGTTCGACCTGTGCTGCAGTGGGGAGAATCTGGGTTGCCCATTGTGGATGGTCTCGCCAACCTTTTGAAGTGTCGTCTACCAGCTACGGTTCGGTGTCTTGCTCATCCAAGTGCACATGTGCGGACTTTGAGTACATCAGTACTTCGCGATATTTTGCAAACTGGTTCGGATGTTTGTAGATCTAAACCAAAGAACGTAAATGGTGTCCACAGTCAATCTTTTCAGTACTTCAATACGGAAGCCATTAACTGGAAAGATGACCTTGAAAAGTGCTTAACTTGGGAAGCTCATAGTCGACTCATAACTGGAATGCCCATTGATGTTCTTCATGTTGCTGCCAAGGAATTAGGCTGCTCCATTTCTTTGTGA 3510 44.53 MVSSPERWIDRLQLSSLFWTPPRDEQHRKAELTTYVECLGQFTSEQFPEDIAELIRSHYPWKGKRLIDDVLATFVLHHPEHGHAVILPIISCIIDGTIAYSKSGSPFSSFISLFCPDTEHDYSEQWALACGEILRILTHYNRPIYKTEQQNMEGERSGGDNHATTSDSSNVPPSQTPLNQDRKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTTATSRGSGKHPQLVPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGIRLPRNWMHLHFLRAIGTAMSMRVGIAADAAAALLFRILSQPALLFPPLRQVEGTEVQQEPLGDYISSYQRQIEMPAAEATIEATAQGIASMICAHGLEVEWRICTIWEAAYGLIPLSSSAVDLPELVVATPLQPPLLSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAILQRAFPSESSTERTRKLNYFSGIGYASKNLSLSELRMMIHSLFLESCASEELASRLLFIVLTVCVSHEAQSNGRKRRRSDNSNFQEERVEPNQDVSSERRETKRKMSKQGPVSAFDSYVLAAVCALACELQLFPLMSRGGKHLSFKGLQDVAKLVKINGSSLEIQSSIDSAVRHTHRILSILEALFSLKPSSLGTSWSYSSNEIVAAAMVAAHVSELFRQSRACMHALSVLMRCKWDEEIYTRASSLYNLIDIHSKAVASIVNRAEPLEVHLVAAPNSEYSRVSSADRRPAEHDDHVYAENGQQSIPKCEEPCHVRAKPSYERESDSNVDTENTLGKRIASFQLDASELANFLTIDRHIGFNGCAPILLRSVLAEKQELCFSVVSLLWHKLIATPEIQPSAEGTSAQQGWRQVVDALCNVVSASPAKAAAAVVLQADREFQPWIAKDDNQGQKMWRINQRIIQLIVELMRNHDTPESLVTLANASDLLLRATDGMLVDGEACTLPQLELLEATARAVRPVLQWGESGLPIVDGLANLLKCRLPATVRCLAHPSAHVRTLSTSVLRDILQTGSDVCRSKPKNVNGVHSQSFQYFNTEAINWKDDLEKCLTWEAHSRLITGMPIDVLHVAAKELGCSISL 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 77170629 77180603 - Hsped.02g28120.1 Hepe02g2812 564313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2812 1169 MobiDBLite consensus disorder prediction 150 185 - -
Hepe02g2812 1169 PANTHER PROTEIN GIGANTEA 1 1168 IPR026211 GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0042752(PANTHER)|GO:0048586(PANTHER)|GO:2000028(InterPro)
Hepe02g2812 1169 MobiDBLite consensus disorder prediction 150 182 - -
Hepe02g2812 1169 MobiDBLite consensus disorder prediction 603 638 - -
Hepe02g2812 1169 MobiDBLite consensus disorder prediction 222 242 - -
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 508 529 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 300 320 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 231 249 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 276 294 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 122 146 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 325 344 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 344 364 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 249 270 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 202 220 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 448 471 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 4 22 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 182 202 IPR026211 GO:2000028(InterPro)
Hepe02g2812 1169 PRINTS Protein GIGANTEA signature 376 398 IPR026211 GO:2000028(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2812 K12124 - - csv:101220984 2096.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2812 Hepe-Chr2:77170629 Hepe06g0111 Hepe-Chr6:3555201 0.0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1318 . . . . Bpe02g00199 . . Bma01g02522 Cmo04g02577 Cmo15g00583 . . . . Sed11g1376 Cpe06g00912 Cpe13g00698 Bhi04g01748 Tan11g1103 Cmetu03g1200 . Hepe02g2812 . . . . . . . . . Cone4ag1468 . Cone17ag0770 Cone20ag0365 . . . . . Blo18g00145 . Bda13g01418 Bpe02g01107 Bpe14g00439 . . . . . . . Car04g02369 Car15g00537 Cpe01g02131 . Bhi09g01545 Tan01g3069 . . . . . Cla09g00952 Cam09g1003 Cec09g1006 Cco09g1018 . . . . . Chy03g00490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001222 2 6 3 2 3 2 3 2 2 2 2 2 3 1 2 2 2 3 3 2 2 2 2 2 1 2 2 8 6 1 77