Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2823 ATGGCGGCTGCAGTTCAGGCTCCGGTGACACCCACTCCAGTTCAAACGGCGGCGATTTCTCCTCTGGCGGGCTCTGTGGCCACTGGAGGCGGCTTTTTGAGTTCATCATTGTATGTTGGCGATCTCGACCAGACTGTCAACGAAGGACAGCTTTTGGAACTGTTTGGCCAAGTGGCTCAGGTTGTCTCCATTAGGGTTTGTAGGGATCAGACACGCAGACAATCGCTTGGTTATGCTTATGTTAATTTTGCCACTCATCAGGATGCTTCCAATGCTTTGGAACATTTGAATTTCACCCATATCAACGGGAGGCCTATCAGGATTATGATTTCTAATCGAGATCCTAGCAGCCGAAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACACATCAATTGATAACAAGGCATTACATGATACATTTGCTACCTTTGGTGCTGTTCTTTCTTGCAAAGTTGCTGTTGATAGCAATGGTCAATCAAAAGGTTATGGTTTTGTGCAATTTGAAAGTGAGGATGCGGCGGATAGTGCTATAATCAGATTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTCGGACATTTTATTCGACACCAGGAAAGGATTCGAGCTAATGGATCTATGTTTACCAATGTTTATGTGAAGAATTTACCTGAAACTACCACGGATGATGACCTAAGAAACCTTTTTACCGCCCATGGCGCCATTACTAGTGCAGTTGTCATGACAGATTCTAATGGGAAGTCCAGAGGTTTTGGTTTTGTGAACTTTCAGAACACAGACTCTGCTGCTGTTGCAGTTGAAAATTTGAATGGTAGCATCCTTGGTGATGACAAGGTTCTGTATGTAGGCAGGGCTCAAAGGAAATCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTGCAAGGTGCTAATTTGTATATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCCGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGATCAACATGGTCTGAGCAAGGGGTCTGGTTTTGTAGCCTTTTCTTCGCCAGATGAAGCGACACGAGCCTTAAATGAGTTGAATGGAAAGATGAAAGGAAGGAAACCTCTGTACGTGGCTATTGCTCAGCGCAAAGAAGACAGAAAGGCTCGACTGCAGGCACAATTTGCTCAAATCCGAGCAGGTGGTGGAATATCACCTTTGCCTTCAGGAATGCCAGGATTTCATCCAGGGGCACCACGACTTGCACCTCAGCAGCTGTATTATGGTCAGGGTAATCCTGGGTTGGTGCCCCCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACTGGAATGCGACCTGGTATGGGCCCGAACTTCATCATGCCTTACCAGTTTCAGAGGCAAGGACAGCCTGGGCCACGCTCGGGGATGAGGCGAGGTGGAAATTCACAACCAATTCAGCAGCAGCAGCAGCTACTGCTTCGTGGCTCTGGACAAGGGTTTAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCCGTCCTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTGGCTTTTGATAATTCTGGAGTGTCTAGCTCCCCCATTGACATCCAGCGATCAATGGCCGTGCCTAGTTCAACACTCGCTTCTGCATTAGCTTCCGCTACACCCGAAAATCAGCGTGTGATGCTCGGCGAGCAGCTATATCCACTCGTAGAACGTCTCGAGCCGGGTCATTCAGCCAAAGTTACTGGAATGTTGCTGGAGATGGACCAACCGGAGGTGCTTCATCTCATCGAGTCACCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGAGCTTCCTGATCAGCTTGGTGCATTGACCGTGAACAAATGA 1962 46.94 MAAAVQAPVTPTPVQTAAISPLAGSVATGGGFLSSSLYVGDLDQTVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFATHQDASNALEHLNFTHINGRPIRIMISNRDPSSRKSGYANVFIKNLDTSIDNKALHDTFATFGAVLSCKVAVDSNGQSKGYGFVQFESEDAADSAIIRLNGMLLNDKQVYVGHFIRHQERIRANGSMFTNVYVKNLPETTTDDDLRNLFTAHGAITSAVVMTDSNGKSRGFGFVNFQNTDSAAVAVENLNGSILGDDKVLYVGRAQRKSEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNELNGKMKGRKPLYVAIAQRKEDRKARLQAQFAQIRAGGGISPLPSGMPGFHPGAPRLAPQQLYYGQGNPGLVPPQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPGPRSGMRRGGNSQPIQQQQQLLLRGSGQGFRYMNNARNGLEPPVLPQGLVGPMMPLAFDNSGVSSSPIDIQRSMAVPSSTLASALASATPENQRVMLGEQLYPLVERLEPGHSAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELPDQLGALTVNK 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 77316626 77320006 - Hsped.02g28230.1 Hepe02g2823 564324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2823 653 FunFam Polyadenylate-binding protein 300 405 - -
Hepe02g2823 653 FunFam Polyadenylate-binding protein 557 639 - -
Hepe02g2823 653 PRINTS Paraneoplastic encephalomyelitis antigen family signature 304 321 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Hepe02g2823 653 PRINTS Paraneoplastic encephalomyelitis antigen family signature 322 337 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Hepe02g2823 653 PRINTS Paraneoplastic encephalomyelitis antigen family signature 213 228 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Hepe02g2823 653 PRINTS Paraneoplastic encephalomyelitis antigen family signature 337 349 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Hepe02g2823 653 Gene3D - 557 638 - -
Hepe02g2823 653 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676(InterPro)
Hepe02g2823 653 Gene3D - 205 310 IPR012677 -
Hepe02g2823 653 Gene3D - 33 123 IPR012677 -
Hepe02g2823 653 FunFam Polyadenylate-binding protein 118 204 - -
Hepe02g2823 653 CDD RRM3_I_PABPs 212 292 - -
Hepe02g2823 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 SMART rrm2_1 318 389 IPR003954 GO:0003676(InterPro)
Hepe02g2823 653 SMART rrm2_1 36 109 IPR003954 GO:0003676(InterPro)
Hepe02g2823 653 SMART rrm2_1 214 286 IPR003954 GO:0003676(InterPro)
Hepe02g2823 653 SMART rrm2_1 124 196 IPR003954 GO:0003676(InterPro)
Hepe02g2823 653 SUPERFAMILY RNA-binding domain, RBD 213 298 IPR035979 GO:0003676(InterPro)
Hepe02g2823 653 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 634 IPR006515 GO:0003723(InterPro)
Hepe02g2823 653 PANTHER RNA BINDING PROTEIN 213 481 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Hepe02g2823 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 SUPERFAMILY PABC (PABP) domain 469 639 IPR036053 GO:0003723(InterPro)
Hepe02g2823 653 Pfam Poly-adenylate binding protein, unique domain 568 633 IPR002004 GO:0003723(InterPro)
Hepe02g2823 653 FunFam Polyadenylate-binding protein 14 117 - -
Hepe02g2823 653 SMART poly_2 573 636 IPR002004 GO:0003723(InterPro)
Hepe02g2823 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 SMART rrm1_1 318 390 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 SMART rrm1_1 214 287 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 SMART rrm1_1 36 109 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 SMART rrm1_1 124 196 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 Gene3D - 311 401 IPR012677 -
Hepe02g2823 653 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723(InterPro)
Hepe02g2823 653 Gene3D - 124 197 IPR012677 -
Hepe02g2823 653 CDD RRM2_I_PABPs 121 197 IPR045305 -
Hepe02g2823 653 MobiDBLite consensus disorder prediction 480 501 - -
Hepe02g2823 653 Pfam RNA recognition motif 37 107 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 Pfam RNA recognition motif 319 387 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 Pfam RNA recognition motif 125 193 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 Pfam RNA recognition motif 215 282 IPR000504 GO:0003723(InterPro)
Hepe02g2823 653 CDD RRM4_I_PABPs 316 394 - -
Hepe02g2823 653 SUPERFAMILY RNA-binding domain, RBD 314 414 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0597 Hepe-Chr2:6124328 Hepe02g2823 Hepe-Chr2:77316626 1.38e-224 dispersed
Hepe02g2823 Hepe-Chr2:77316626 Hepe07g0453 Hepe-Chr7:4693582 3.87e-232 dispersed
Hepe02g2819 Hepe-Chr2:77288650 Hepe02g2823 Hepe-Chr2:77316626 2.43e-07 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2823 K13126 - csv:101219081 1119.76