Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2847 ATGATGAACACCATGGGAATGTTTGATGATATTGGCTTTTGCCGAAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGATAGCTCGGGAGAATGAAGCTGACGCTACTTTGGAGGAAGATTATACTGATGAAGAGCTGGACGTTGACGAGCTTGAGAGAAGGATGTGGCGGGACCGAATGCTTTTGAGGCGACTCAAAGAACAAGGCAAAGAGAAGGAAGAAGGGGTTGATAATTCAAAGCAGCGTCAATCCCAGGAGCAGGCCCGCAGGAAGAAGATGTCTCGGGCTCAAGACGGTATTCTGAAATATATGTTGAAAATGATGGAGGTTTGTAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAAGGAAAACCAGTAAGTGGAGCTTCTGATAATCTCCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCTGCAGCGATTTCCAAATATCAGGCTGACCATGCGATTCCTGGGAACGATGATGACTGCAATACAGTGACATCCACTCCTCACACCTTACAAGAGCTCCAAGACACGACCCTCGGATCACTTTTGTCGGCCCTGATGCAGCACTGCGATCCACCCCAGAGGCGATTTCCATTGGAGAAGGGAGTTTCACCACCGTGGTGGCCCACCGGAAATGAGGAATGGTGGCCTGAATTGGGACTGCCCAAGGACCAGGGGCCTCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTTCTCACTGCTGTGATTAAGCACATGTCTCCTGATATCGCCAAGATTCGCAAGCTTGTTCGGCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGCTGGCCATTGTAAACCAGGAAGAAGCCTCGGCCAGGAAATTGTATCCTGATAAATGCCCGCCTGTGTCGATTTGTGGGAGTGGATCTCTTCTAATCAGTGACACCAGCGATTACGACGTCGAAGGAGTAGAAGATGAAGCAAATGTCGATCTAGAGGAAAGCAAACCCCACGATCTCAATTTCTTTAATATGGGGGCTCCTGGACCTAGAGAGAGGCTTATGATGCCGCCAATTGGACCCCATATCAAGGAAGAACTCTTGGAGAACAATTCAGACTTCATTCAAAAGAGGAAGCAGCTGACAGATGAGTCGAATACAATGATGAATCAGAAGATTTATACTTGCGAGTATCCTCAATGCCCTTATAATAGTCAGCGCCTCGGGTTTCTCGACAGGACTTCAAGAAACAACCACCAGTTAAATTGCCCATTTAGGAGTGATTCTTCTTCCCATATATTTAGCATGCCAAGCTTTCAAACTAACGATGACAAATCATCCCCAGTTCCTCCATCCTTCAACCATTCTAAGCCTCCTACTCGGCCGATGAACCCGACTCCACCCTTCAGAGTATCAGGACTTGGACTTCCAGAAGATGGACAGAAAATGATTTCCGACCTTCTGAGTTTCTACGATTCTAACCATCAACAGGACAAAAGTTTGAATTCCGTGAACGTCGAAGCTAGAGACAATCACAATCACAATCACAACCAACAGCTGCCGAAATTCCAACTCCAAGTCGACGATAACTTGTATTGCCAAGGAGCAATTGTTGGAAACAGTAGCATGCCAATGCAGCACCCTGATTTTTCTTCCACAAAAGTTCCATTTGACGAATACAAGGCATTCGATTCTCCATTCGGCATGTATTCCAACGACAACATTCCAGACTTCAGATTTGGTTCTCCATTCAACTTGGCATCAATTGATTATCCAGTAGATCCACAATTGCCGAAGCAAGATACACCGTTATGGTACCTTTGA 1854 46.12 MMNTMGMFDDIGFCRNLEYFSAPPGEQEIARENEADATLEEDYTDEELDVDELERRMWRDRMLLRRLKEQGKEKEEGVDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAISKYQADHAIPGNDDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEASARKLYPDKCPPVSICGSGSLLISDTSDYDVEGVEDEANVDLEESKPHDLNFFNMGAPGPRERLMMPPIGPHIKEELLENNSDFIQKRKQLTDESNTMMNQKIYTCEYPQCPYNSQRLGFLDRTSRNNHQLNCPFRSDSSSHIFSMPSFQTNDDKSSPVPPSFNHSKPPTRPMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNHQQDKSLNSVNVEARDNHNHNHNQQLPKFQLQVDDNLYCQGAIVGNSSMPMQHPDFSSTKVPFDEYKAFDSPFGMYSNDNIPDFRFGSPFNLASIDYPVDPQLPKQDTPLWYL 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 77535414 77538869 - Hsped.02g28470.1 Hepe02g2847 564348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2847 617 MobiDBLite consensus disorder prediction 446 461 - -
Hepe02g2847 617 Coils Coil 36 84 - -
Hepe02g2847 617 MobiDBLite consensus disorder prediction 446 476 - -
Hepe02g2847 617 FunFam Ethylene insensitive 3-like 1 172 309 - -
Hepe02g2847 617 SUPERFAMILY DNA-binding domain of EIN3-like 178 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe02g2847 617 MobiDBLite consensus disorder prediction 69 95 - -
Hepe02g2847 617 FunFam Ethylene insensitive 3-like 1 84 162 - -
Hepe02g2847 617 Coils Coil 374 394 - -
Hepe02g2847 617 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 612 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Hepe02g2847 617 Gene3D - 84 164 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe02g2847 617 MobiDBLite consensus disorder prediction 462 476 - -
Hepe02g2847 617 Gene3D - 176 309 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Hepe02g2847 617 Pfam Ethylene insensitive 3, DNA-binding domain 51 299 IPR047091 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2847 K14514 - - csv:101214396 1072.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2847 Hepe-Chr2:77535414 Hepe09g1037 Hepe-Chr9:10749433 4.87e-239 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g1037 . 2 625 EIL Transcription Factor Family AT2G27050 59.7 6.9e-194 674.1
Hepe02g2847 . 7 510 EIL Transcription Factor Family AT2G27050 61.5 7.0e-170 594.3
Hepe09g1085 . 68 328 EIL Transcription Factor Family AT2G27050 64.7 2.0e-92 337.0
Hepe09g1085 . 72 329 EIL Transcription Factor Family AT5G21120 51.7 2.4e-73 273.5
Hepe09g1085 . 60 580 EIL Transcription Factor Family AT1G73730 54.1 7.1e-140 494.6
Hepe09g1037 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.7e-104 375.9
Hepe02g2847 . 35 336 EIL Transcription Factor Family AT1G73730 60.1 1.6e-102 370.5
Hepe09g1037 . 3 625 EIL Transcription Factor Family AT3G20770 62.1 1.0e-211 733.4
Hepe02g2847 . 7 510 EIL Transcription Factor Family AT3G20770 62.9 1.5e-170 596.7
Hepe09g1085 . 68 294 EIL Transcription Factor Family AT3G20770 72.1 6.7e-94 342.0
Hepe09g1085 . 85 290 EIL Transcription Factor Family AT5G65100 58.9 1.7e-69 260.8
Hepe02g2847 . 45 300 EIL Transcription Factor Family AT5G10120 60.0 1.9e-85 313.5
Hepe09g1085 . 79 292 EIL Transcription Factor Family AT5G10120 57.5 4.6e-71 265.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55138 PF04873 EIN3 2.40E-132 No_clan Hepe TF