Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2902 ATGGCAGCGCCGAAGCCTCGCGCCACTCGGTCCAGGTCTCACAGGGATGTCCCGGATTTGGAGAAGATGGACGGTGCTTACAGTTGGGACGCCCTCGAATGGACCAAGATTGAGCCGGTTACGCGGTCGGTTTCGCGTGTGAACTTGGATTGCTTGTTTGAAGCCGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACTGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGATGTTATTGCCCTTGGCACTATACCACTAGCGACAATTGAAAAATTCAACAAAATAGTTGTGAAGACAAATTCTGTCTCTCGTCAATCTGAAAAGTCTTCAGCTAGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGCATTATTGAGGTGTATGAAACCTGCAAGAATATGGGATCTATATGCATTCAAGTCCGGGCCATCAAAGTACAGTAATACAGACCCAAAAGTTCGCTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGATTCCCTACGTGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAACATCAATTCCAGTTATACTTTGTGTCAGAGTTATCCATTTGCATTAGTTGTTCCAAAACATTTTAGTGATGAAGAAATGTTGCAGGCTTCTACCTTTCGTGCTAGATGTCGTTTGCCTGTTGTTTCATGGTGCAATCCTGGTACGGGAGCTGTTCTTGCACGATCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACTGATGAAAAGCTTGTTGCTGCGCTTTGCTCATATCTTGCTGGTGTTCAAGGTTCATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGCTCAGAATCTTCATCAAATTATTTGCAATCTGAGATAGTTTTTTTTGGCATTGACAACATACATGCAATGAGGGATAGTCTTACTCGGCTCAGAGAGTACTTGGATACTCATGGTGCAAAATCATCTGACGGAATGTCATCATTCTTGAGACATGGCGGATGGACTTGGGGTGGAGGTAACCTTAGTAGCATGTCTGCATCTGTATCAACTCTGGGAGATAGTGGCTGGTTAATCCATGTTCAGAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTAGAAAAAGCAACGGTGCTAGTTCATTGCAGTGATGGCTGGGACAGAACATCACAACTAGTTTCACTTGCTAGCTTACTACTTGATCCTTATTATCGGACGTTTGCCGGATTTCAGGCACTGGTTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCCGATCGGTCTGGCATACCGACCATATCGGGAAGTGGTAACATGCCTTACGAACTCTCTAGGCAGTCCTCAACTGGAAGTTTATCTTCTTCACCTGTGCCTCAGCAATCGGGATCATTCACAACTCGAGCTTCCAGTCCTCCTCATGCACAAACATCAAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTATTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTCCTGGTGGATCTGTTGGATTGTATGCTTTCCTGTCGCTTTGGGAATTTCTTTTGCAATTGTGAGAAGGAGCGGCAGCAATGCGCAGTTTCTGAAGTTTGTGGCTGTCTATGGGCATATTTAGCTGATTTACGAGCTTCGGAAGGAAGTTCGCATGTACATTATAACCTCTTCTATGATCCAACCAGACATGAAGGTCCTCTCTTACCTCCTGCGGCAGCTCTAGCTCCAACTCTCTGGCCACAGTTCCATCTCCGTTGGGCTTGCCCTAAAGAATCCCAAGCTGGGGAACTTGAAGCGAGATGCAGAAAAATGGCTATAAATTTCTCTGAAATGCAGAAGGACCAAGAAATAGCCGAGAGAAAAGCCCAAGAGATGACGGCTGCCATGGAATCATTAAAAGCAGAGTTGCAAAACGAAAAACATTCGAGTGTATCTGCTAGGAATGAAGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAATCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGTTATTGTACTGTTGACATTGAAGGCGACCTGATGAAATCCAATCAGAAAAGTCATCCTGCTTCAAGAAGTTCTTCAAGAAGTGCTTCAAGAAGAGCTTCACATCGTTCACTTCCTGTTAGTGAAGAGAATGATGTCTCTCTTTCAATCACAGTAACAGAAGATGATGCGCCAAGCAACTCTCTCAGTCACGTCTGTGAAGCTCTTTGCCCATTGCGCACTCGGGACGGAGGGTGCCAGTGGCCCGATGCTGGTTGTGCTCATTTGGGTAGCCAATTTATTGGACTAAAGGCAAATTTCGATGCATTTGATCAACTATCTATATATGATGGTTATTTCAAACCAGAGTGA 2589 43.57 MAAPKPRATRSRSHRDVPDLEKMDGAYSWDALEWTKIEPVTRSVSRVNLDCLFEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIEKFNKIVVKTNSVSRQSEKSSARRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFKSGPSKYSNTDPKVRLLNEYFRLLGKDSLRASMSMIEDGSFTLSNELWRITNINSSYTLCQSYPFALVVPKHFSDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSYLAGVQGSSRRKLYIADARPRKNALANGAMGGGSESSSNYLQSEIVFFGIDNIHAMRDSLTRLREYLDTHGAKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTSQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGIPTISGSGNMPYELSRQSSTGSLSSSPVPQQSGSFTTRASSPPHAQTSNNCSPIFLQWVDCISQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFFCNCEKERQQCAVSEVCGCLWAYLADLRASEGSSHVHYNLFYDPTRHEGPLLPPAAALAPTLWPQFHLRWACPKESQAGELEARCRKMAINFSEMQKDQEIAERKAQEMTAAMESLKAELQNEKHSSVSARNEAKSASKECEAIKRAIQSLGCKVQVSSNGYCTVDIEGDLMKSNQKSHPASRSSSRSASRRASHRSLPVSEENDVSLSITVTEDDAPSNSLSHVCEALCPLRTRDGGCQWPDAGCAHLGSQFIGLKANFDAFDQLSIYDGYFKPE 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 78090365 78104317 + Hsped.02g29020.1 Hepe02g2902 564403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2902 862 PANTHER MYOTUBULARIN-RELATED 51 793 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Hepe02g2902 862 MobiDBLite consensus disorder prediction 505 538 - -
Hepe02g2902 862 Pfam Myotubularin-like phosphatase domain 215 595 IPR010569 -
Hepe02g2902 862 Coils Coil 685 719 - -
Hepe02g2902 862 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 657 IPR029021 -
Hepe02g2902 862 MobiDBLite consensus disorder prediction 760 792 - -
Hepe02g2902 862 ProSitePatterns Tyrosine specific protein phosphatases active site. 441 451 IPR016130 GO:0016311(InterPro)
Hepe02g2902 862 CDD PTP-MTM-like 261 555 - -
Hepe02g2902 862 Gene3D - 63 162 IPR011993 -
Hepe02g2902 862 MobiDBLite consensus disorder prediction 761 792 - -
Hepe02g2902 862 ProSiteProfiles Myotubularin phosphatase domain. 198 653 IPR010569 -
Hepe02g2902 862 SMART gram2001c 43 111 IPR004182 -
Hepe02g2902 862 SUPERFAMILY PH domain-like 52 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2902 K18081 - - csv:101204839 1579.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g616 . Blo13g00941 . . . . . Bma08g01169 . . . . . . . Cpe13g00776 . Bhi04g01282 . . . Hepe02g2902 . Lcy10g1700 . . . . . . . . . Cone11ag1023 Cone18ag0555 Lsi08g00665 . . . . . . Bda15g00402 . . . . . . Cmo15g00495 . Cma15g00486 . Car15g00447 . . . . . . . . . Cla08g00816 Cam08g1250 Cec08g0835 Cco08g0946 Clacu08g0953 . Cre08g0754 . . Chy03g00887 Cme03g01177
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35