Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2922 ATGTTTGCATCCACTTGCATTTTCTTCTTCATTTGCCTTTTGAGCTTCTCTTTGCCTCTTACAATGGCAGCAACTTTCAATTTCAATCTCACTATCCCACATCTTCTTCTTCCAGATCCTGAAACTGTTGCTTATCAAGTTCAGAGGACTGTGAATGATTCCTTTTCCAGAAGACAAATGATGTCCAGTTCTTCCTGTCTAACCGGAAACCCTATCGACGATTGCTGGCGCTGCGACTCAAATTGGCAAGCGAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGCCGAGATGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTCACAGATTCCTCCGATTCCGACCCTGTGAACCCTCGCCCTGGAACTCTCCGCTACGCCGTGGTTCAAGACGCACCTCTCTGGATCGTCTTCTCCGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGACGGCCGAGGCGCGAATGTTCACATCACCGGCGGCGGTTGTGTCACTCTCCAATACATCTCGAATATAATCATCCACAACATCAATATTCATCATTGTATCCCTACTGGCCATACCAATGTCCGATCCAGCCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGACGGAATCTCGATCTTCAGTTCGCGGAACGTATGGATCGACCATTGCTCACTCTCGTACTGTACCGACGGCTTAATCGACGTCATAATGGGATCGAGTGGAATCACGATCTCGAACAACTACTTCTCGCATCACGATGAGGTGATGCTGCTAGGGCACGACGATGGTTTCTCGCCGGACTCGGCGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGTTGGTTCAGAGGATGCCGCGGTGCCGGCGGGGATACATTCATGTCGTCAATAACGAGTTCCGATCGTGGGAGATGTATGCTATTGGCGGCAGCGGTGGTCCGACGATCAACAGCCAAGGGAATCGGTATATTGCTCCGGGGAATCCCAATGCAAAGGAGGTGACGAAGCGCGTGGATACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATTATGGAAAACGGAGCATTTTTTGTGCCCTCCGGCGACGTACTGAGCAATATGTACGTTAAAGCTTCCAGTGTTGCCCCCAAATCCGCCGCCCTCGTCGATCAGCTCACTCTTAACGCCGGCGTCTTCGGCGGACCCAGGGAAAATGAACAGAGCAACTCATATCCCGGAGACGAAAGCTCCTCCAGTTCGGGGACGAGTGGCAGCGATGGAGGTGGTGACTACTTCGGGATGATATTCGGTGGGGGCGGGGTGAACAGTGCACCACCACCATCTCTTTCAGTTGTTAACATGATCATTCTAACCCTGCTTACTGTTTTAGTTCTGTACACGAACTCCAACTATGATACTTTATTATTGTTGACAACATTGTCATTGTAG 1482 50.74 MFASTCIFFFICLLSFSLPLTMAATFNFNLTIPHLLLPDPETVAYQVQRTVNDSFSRRQMMSSSSCLTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDAPLWIVFSADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNVWIDHCSLSYCTDGLIDVIMGSSGITISNNYFSHHDEVMLLGHDDGFSPDSAMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMENGAFFVPSGDVLSNMYVKASSVAPKSAALVDQLTLNAGVFGGPRENEQSNSYPGDESSSSSGTSGSDGGGDYFGMIFGGGGVNSAPPPSLSVVNMIILTLLTVLVLYTNSNYDTLLLLTTLSL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 78289569 78294982 + Hsped.02g29220.1 Hepe02g2922 564423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Hepe02g2922 493 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Hepe02g2922 493 Pfam Pectate lyase 152 321 IPR002022 -
Hepe02g2922 493 SMART amb_all 144 341 IPR002022 -
Hepe02g2922 493 MobiDBLite consensus disorder prediction 410 436 - -
Hepe02g2922 493 SUPERFAMILY Pectin lyase-like 70 409 IPR011050 -
Hepe02g2922 493 MobiDBLite consensus disorder prediction 413 436 - -
Hepe02g2922 493 Gene3D - 69 411 IPR012334 -
Hepe02g2922 493 PANTHER PECTATE LYASE 18-RELATED 20 410 IPR045032 GO:0030570(InterPro)
Hepe02g2922 493 FunFam Pectate lyase 69 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2922 Hepe-Chr2:78289569 Hepe05g1732 Hepe-Chr5:67554278 4.37e-183 dispersed
Hepe01g1056 Hepe-Chr1:75259090 Hepe02g2922 Hepe-Chr2:78289569 5.28e-224 wgd
Hepe02g2922 Hepe-Chr2:78289569 Hepe04g0960 Hepe-Chr4:63987509 2.81e-210 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2922 K01728 - csv:101207535 796.964