Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g2922 | ATGTTTGCATCCACTTGCATTTTCTTCTTCATTTGCCTTTTGAGCTTCTCTTTGCCTCTTACAATGGCAGCAACTTTCAATTTCAATCTCACTATCCCACATCTTCTTCTTCCAGATCCTGAAACTGTTGCTTATCAAGTTCAGAGGACTGTGAATGATTCCTTTTCCAGAAGACAAATGATGTCCAGTTCTTCCTGTCTAACCGGAAACCCTATCGACGATTGCTGGCGCTGCGACTCAAATTGGCAAGCGAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGCCGAGATGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTCACAGATTCCTCCGATTCCGACCCTGTGAACCCTCGCCCTGGAACTCTCCGCTACGCCGTGGTTCAAGACGCACCTCTCTGGATCGTCTTCTCCGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGACGGCCGAGGCGCGAATGTTCACATCACCGGCGGCGGTTGTGTCACTCTCCAATACATCTCGAATATAATCATCCACAACATCAATATTCATCATTGTATCCCTACTGGCCATACCAATGTCCGATCCAGCCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGACGGAATCTCGATCTTCAGTTCGCGGAACGTATGGATCGACCATTGCTCACTCTCGTACTGTACCGACGGCTTAATCGACGTCATAATGGGATCGAGTGGAATCACGATCTCGAACAACTACTTCTCGCATCACGATGAGGTGATGCTGCTAGGGCACGACGATGGTTTCTCGCCGGACTCGGCGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGTTGGTTCAGAGGATGCCGCGGTGCCGGCGGGGATACATTCATGTCGTCAATAACGAGTTCCGATCGTGGGAGATGTATGCTATTGGCGGCAGCGGTGGTCCGACGATCAACAGCCAAGGGAATCGGTATATTGCTCCGGGGAATCCCAATGCAAAGGAGGTGACGAAGCGCGTGGATACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATTATGGAAAACGGAGCATTTTTTGTGCCCTCCGGCGACGTACTGAGCAATATGTACGTTAAAGCTTCCAGTGTTGCCCCCAAATCCGCCGCCCTCGTCGATCAGCTCACTCTTAACGCCGGCGTCTTCGGCGGACCCAGGGAAAATGAACAGAGCAACTCATATCCCGGAGACGAAAGCTCCTCCAGTTCGGGGACGAGTGGCAGCGATGGAGGTGGTGACTACTTCGGGATGATATTCGGTGGGGGCGGGGTGAACAGTGCACCACCACCATCTCTTTCAGTTGTTAACATGATCATTCTAACCCTGCTTACTGTTTTAGTTCTGTACACGAACTCCAACTATGATACTTTATTATTGTTGACAACATTGTCATTGTAG | 1482 | 50.74 | MFASTCIFFFICLLSFSLPLTMAATFNFNLTIPHLLLPDPETVAYQVQRTVNDSFSRRQMMSSSSCLTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDAPLWIVFSADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNVWIDHCSLSYCTDGLIDVIMGSSGITISNNYFSHHDEVMLLGHDDGFSPDSAMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMENGAFFVPSGDVLSNMYVKASSVAPKSAALVDQLTLNAGVFGGPRENEQSNSYPGDESSSSSGTSGSDGGGDYFGMIFGGGGVNSAPPPSLSVVNMIILTLLTVLVLYTNSNYDTLLLLTTLSL | 493 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 78289569 | 78294982 | + | Hsped.02g29220.1 | Hepe02g2922 | 564423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 318 | 337 | IPR018082 | - | |
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 360 | 384 | IPR018082 | - | |
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 216 | 237 | IPR018082 | - | |
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 152 | 168 | IPR018082 | - | |
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 92 | 109 | IPR018082 | - | |
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 116 | 141 | IPR018082 | - | |
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 296 | 315 | IPR018082 | - | |
Hepe02g2922 | 493 | PRINTS | Pollen allergen Amb family signature | 389 | 412 | IPR018082 | - | |
Hepe02g2922 | 493 | Pfam | Pectate lyase | 152 | 321 | IPR002022 | - | |
Hepe02g2922 | 493 | SMART | amb_all | 144 | 341 | IPR002022 | - | |
Hepe02g2922 | 493 | MobiDBLite | consensus disorder prediction | 410 | 436 | - | - | |
Hepe02g2922 | 493 | SUPERFAMILY | Pectin lyase-like | 70 | 409 | IPR011050 | - | |
Hepe02g2922 | 493 | MobiDBLite | consensus disorder prediction | 413 | 436 | - | - | |
Hepe02g2922 | 493 | Gene3D | - | 69 | 411 | IPR012334 | - | |
Hepe02g2922 | 493 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 410 | IPR045032 | GO:0030570(InterPro) | |
Hepe02g2922 | 493 | FunFam | Pectate lyase | 69 | 411 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2922 | Hepe-Chr2:78289569 | Hepe05g1732 | Hepe-Chr5:67554278 | 4.37e-183 | dispersed | |
Hepe01g1056 | Hepe-Chr1:75259090 | Hepe02g2922 | Hepe-Chr2:78289569 | 5.28e-224 | wgd | |
Hepe02g2922 | Hepe-Chr2:78289569 | Hepe04g0960 | Hepe-Chr4:63987509 | 2.81e-210 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g2922 | K01728 | - | csv:101207535 | 796.964 |