Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2954 ATGAATAGAGGAATGGATTCAGTGATAGAACCAATGAGGAACCAGGAGAATTGCTTAGATTCTCAGCTATGGCATGTCTGTGCTGGTGGGATGGTTCAAATGCCTGACATTAACTCAAAGGTAGTCTACTTCCCTCAGGGCCATGCCGAGCACGCCCAGGGGAATGTCGAATTCGGGAATAATCGAATTCCTTCCCTCATTCCTTGCAGGGTGTCTGCCATTAGATATATGGCAGATCCTGAAACGGATGAGGTTTTTTCTAAGATGAGGTTGGTTCCACTGAGGAACGATGAACTCGGTTTGGAAGATGATGATGAGTTTGTAGGCCAGAACAATGACATTAGGAGTCCGGAGAAACCTATCTTCTTTGCTAAGACATTGACACAATCTGATGCAAACAACGGTGGAGGATTCTCTGTGCCTCGCTATTGCGCCGAGACCATCTTTCCTCGCTTGGATTACTCGGCAGAGCCTCCTGTTCAGACCATTCTTGCTAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATCTACAGAGGGACTCCCCGTCGCCATCTTTTGACGACTGGATGGAGCAATTTTGTGAATCAGAAGAAACTTGTTGCTGGGGACACGATTGTTTTCCTGAGGGCAGAAAATGGTGATCTTTGTGTCGGAATTAGGCGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCGCCTGGGTGGAACCCAACAAATGCAGGCTCTCCCCTTGTAGGGTATTCTGATTTTATGAGGGAGAATGAAGGTAGGTTGGTAAGAAGAAATCCAAATGGTAATCTGAGTGGGAGAGTGAAGGTCGAATCTGTCATTGGAGCTGCAATGCTTGCTGCCAGTGGCAAGCCCTTTGAGGTTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTGGGGCTTCTATTGTGAGATCTGCAATGCAAGTTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACCGAAGATGTATCTCGGGTAAGCTGGTTTATGGGAACTATATCTTCTATCCAGGTAGCTGATCCTATTCGGTGGCCTGATTCTCCATGGCGACTTCTGCAGGTGACATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTGTCAACCCATGGTTGGCTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCGCCACCGAGAAAGAAGCCGCGTTTTCCGCTTCCAGCGGAAACTGCCATATTTGGTCACCTTCCAATGCCATCGTTTTCCACCAATTTCTTTGATTCAACCAACCCGTTACACAGCATTACAGCTCACAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCCAACCTCCAAATCAGCAAACCGCATTCGGTACAATTTCCCGCTGGTCTTAAGCACCTTGATGGTGCCACTCCTCTTCCTGGCATCCGTGGCGAGGATATTTTCGGAGGCACGAAAAACCCTGATGATCTTTCTCGCTGGCTAACAATGGGAAATCACATCCAAAGCTCAAAAGAAAACAAAGAAACAAAACCAGCTCATATCATATTGTTTGGTCAACTCATTCTTCCTAATCAACAGGCTTCTAACAGCTCCTCTGGAGATACGAACCCATCAGATGGGAATCTAGAGAGAGCTTCAAATCTTTCTGACGGTTCTGGTTTGTCCTCACAGCAGAATGGTTCACTGGAGCATTCGTCAGATGGAGGATCTACCTCGTACAACGGTCAGGACAAAACCGGTCTTAACTTGGACAATGGTCATTGCAAAGTGTTTATGGAGTTGGAGAATGTCGGTCGTACTCTTGATCTATCGGCCCTCGGGTCATACGATGATTTGTATAGAAAGCTGGGCAATATGTTTGGTGTAGGAAGCTCAGAGAGGCTGGCTTCTGTTCTTTATCAGGATGCACTTGGTGTTACAAAGCATGCTGGAGGAGAGCCTTTCAGGTAA 1992 46.59 MNRGMDSVIEPMRNQENCLDSQLWHVCAGGMVQMPDINSKVVYFPQGHAEHAQGNVEFGNNRIPSLIPCRVSAIRYMADPETDEVFSKMRLVPLRNDELGLEDDDEFVGQNNDIRSPEKPIFFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDTIVFLRAENGDLCVGIRRAKRGIGCGIDYSPGWNPTNAGSPLVGYSDFMRENEGRLVRRNPNGNLSGRVKVESVIGAAMLAASGKPFEVVYYPCAGTPEFVVGASIVRSAMQVHWYSAMRFKMPFETEDVSRVSWFMGTISSIQVADPIRWPDSPWRLLQVTWDEPDLLQNVKSVNPWLAEVVVNMPAIHVSPFSPPRKKPRFPLPAETAIFGHLPMPSFSTNFFDSTNPLHSITAHNIPAGIQGARHTQFGLSSSNLQISKPHSVQFPAGLKHLDGATPLPGIRGEDIFGGTKNPDDLSRWLTMGNHIQSSKENKETKPAHIILFGQLILPNQQASNSSSGDTNPSDGNLERASNLSDGSGLSSQQNGSLEHSSDGGSTSYNGQDKTGLNLDNGHCKVFMELENVGRTLDLSALGSYDDLYRKLGNMFGVGSSERLASVLYQDALGVTKHAGGEPFR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 78820392 78823942 + Hsped.02g29540.1 Hepe02g2954 564455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2954 663 FunFam Auxin response factor 121 225 - -
Hepe02g2954 663 Gene3D - 121 225 IPR015300 -
Hepe02g2954 663 SUPERFAMILY DNA-binding pseudobarrel domain 117 225 IPR015300 -
Hepe02g2954 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 662 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe02g2954 663 CDD B3_DNA 120 223 IPR003340 GO:0003677(InterPro)
Hepe02g2954 663 ProSiteProfiles PB1 domain profile. 599 663 IPR053793 -
Hepe02g2954 663 MobiDBLite consensus disorder prediction 539 592 - -
Hepe02g2954 663 Gene3D - 597 663 - -
Hepe02g2954 663 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677(InterPro)
Hepe02g2954 663 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677(InterPro)
Hepe02g2954 663 Pfam Auxin response factor 282 365 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe02g2954 663 Gene3D - 321 392 - -
Hepe02g2954 663 SMART B3_2 123 225 IPR003340 GO:0003677(InterPro)
Hepe02g2954 663 FunFam Auxin response factor 320 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2954 Hepe-Chr2:78820392 Hepe10g0526 Hepe-Chr10:6080792 8.38e-109 dispersed
Hepe02g2954 Hepe-Chr2:78820392 Hepe04g0938 Hepe-Chr4:63646112 2.41e-266 wgd
Hepe02g2954 Hepe-Chr2:78820392 Hepe08g0894 Hepe-Chr8:8125352 5.99e-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55148 PF02362 B3 2.80E-21 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2954 K14486 - csv:101204568 1066.6