Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2960 ATGGCGGAGCGCGGGTCGTTCTCGGCGAAGGACTACCAGGATCCGCCACCGGCGCCACTGATCGACGCGGTGGAGATAAGGAAGTGGTCGTTTTACAGAGCTCTGATTGCGGAGTTCATAGCTACTCTGCTTTTCCTGTACGTGACTGTGTTGACGGTGATCGGCTACAAATCGCAAACGGATCATATCGGGAACAAGAATGCGGTGGATCCTTGCGGTGGCGTTGGGATTCTTGGAATTGCTTGGGCATTCGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCCGGGATTTCAGGGGGCCATATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGCCCGTAAGGTGTCATTGGTGCGGGCCGTAATGTACATGGTGGCCCAATGCTTGGGGGCCATCAGTGGAGTTGGGCTCGTGAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGTGGGGCCAATGGGCTCGCCGACGGCTACACCGCCGGCGTCGGATTGGCGGCGGAGATCGTCGGCACTTTTGTGTTGGTGTACACTGTGTTCTCAGCTACTGATCCCAAACGAAGCGCCAGAGATTCCCATGTTCCCGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCATTGTTCACTTGGCCACAATTCCAATCACAGGCACTGGAATCAACCCAGCAAGGAGCTTGGGATCTGCTCTTATTTTCAATGACCAAAACACTTGGAATCACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCAATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGGTCATTCAGAAGCAACCCACATGTGTGA 855 53.1 MAERGSFSAKDYQDPPPAPLIDAVEIRKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHIGNKNAVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADGYTAGVGLAAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGSALIFNDQNTWNHHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 78862804 78867177 + Hsped.02g29600.1 Hepe02g2960 564461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2960 284 SUPERFAMILY Aquaporin-like 25 268 IPR023271 -
Hepe02g2960 284 CDD MIP 33 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Hepe02g2960 284 FunFam Probable aquaporin PIP1-2 18 282 - -
Hepe02g2960 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Hepe02g2960 284 Gene3D Glycerol uptake facilitator protein. 18 284 IPR023271 -
Hepe02g2960 284 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 Pfam Major intrinsic protein 25 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2960 284 NCBIfam MIP family channel protein 37 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2960 Hepe-Chr2:78862804 Hepe04g0930 Hepe-Chr4:63574595 3.38e-165 dispersed
Hepe01g1025 Hepe-Chr1:74942416 Hepe02g2960 Hepe-Chr2:78862804 3.98e-167 wgd
Hepe02g2960 Hepe-Chr2:78862804 Hepe04g0928 Hepe-Chr4:63560610 7.52e-143 wgd
Hepe02g2960 Hepe-Chr2:78862804 Hepe05g0256 Hepe-Chr5:3034094 1.60e-144 wgd
Hepe02g2960 Hepe-Chr2:78862804 Hepe08g0886 Hepe-Chr8:8024237 8.71e-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2960 K09872 - csv:101205700 494.582