Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2978 ATGATCGAAAGATCCACCAACCTAGACTGGTACAAGGGTCCAACCCTTCTCGAGGCTCTCGACCAGATTCACGAGCCCAAGAGACCAACTGACAAGCCCCTTCGTCTTCCACTTCAGGATGTTTACAAGATTGGAGGTATTGGAACTGTCCCAGTGGGTCGTGTTGAGACTGGTATTATCAAACCCGGCATGGTCATAACCTTTGCCCCATCTGGACTGACTACTGAAGTAAAATCTGTTGAGATGCACCATGAAACTCTCCTAGAAGCTCTCCCTGGTGACAATGTGGGATTCAACGTGAAGAACGTCGCCGTGAAGGATCTCAAGCGAGGCTTTGTCGCCTCGAATTCGAAGGATGATCCCGCCAAGGAAGCTGCCAACTTCACTTCACAAGTTATCATCATGAACCATCCAGGGCAGATTGGAAATGGTTATGCCCCTGTCCTTGACTGCCACACCTCTCATATTGCAGTTAAATTTGCCGAGATCTTGACAAAGATCGACAGGCGATCGGGTAAAGAACTCGAGAAAGAGCCCAAGTTCTTGAAGAACGGCGATGCTGGATTTGTTAAGATGATCCCAACCAAGCCAATGGTGGTGGAGAGCTTCTCGGAGTACCCCCCACTCGGGCGATTCGCCGTGAGGGATATGCGTCAAACTGTGGCCGTCGGTGTCATCAAGAGCGTCGAGAAGAAGGATCCGAGCGGCGCCAAGGTCACCAAGTCTGCTGCTAAGAAATCTGGTAAGTGA 750 50.53 MIERSTNLDWYKGPTLLEALDQIHEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVITFAPSGLTTEVKSVEMHHETLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVESFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGK 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79021120 79021869 - Hsped.02g29780.1 Hepe02g2978 564479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2978 249 Gene3D Translation factors 3 118 - -
Hepe02g2978 249 PANTHER ELONGATION FACTOR 1 ALPHA 1 246 - -
Hepe02g2978 249 Pfam Elongation factor Tu domain 2 48 113 IPR004161 GO:0005525(InterPro)
Hepe02g2978 249 FunFam Elongation factor 1-alpha 29 116 - -
Hepe02g2978 249 CDD EF1_alpha_II 30 120 - -
Hepe02g2978 249 SUPERFAMILY Translation proteins 31 160 IPR009000 -
Hepe02g2978 249 CDD EF1_alpha_III 123 226 - -
Hepe02g2978 249 FunFam Elongation factor 1-alpha 123 230 - -
Hepe02g2978 249 Gene3D Translation factors 123 230 - -
Hepe02g2978 249 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 126 229 IPR009001 -
Hepe02g2978 249 Pfam GTP-eEF1A C-terminal domain-like 127 227 IPR054696 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2978 Hepe-Chr2:79021120 Hepe08g0870 Hepe-Chr8:7899664 2.07e-165 dispersed
Hepe02g2977 Hepe-Chr2:79016581 Hepe02g2978 Hepe-Chr2:79021120 4.17e-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2978 K03231 - rcu:8264976 485.723