Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g2979 | ATGGGTAAGGAGAAGGTACACATCAACATTGTGGTCATTGGCCACGTCGACTCCGGCAAGTCGACCACCACTGGTCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTTTTGGACAAGCTTAAGGCTGAACGTGAGCGCGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACCACTAAGTATTACTGCACTGTCATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCACAGGCTGACTGTGGTGTTCTTATCATTGACTCTACTACCGGAGGTTTTGAAGCTGGTATTTCCAAGGATGGGCAGACCCGTGAACATGCCCTTCTTGCTTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGGTAATGTGGACTAACTTTCCTTTATTTGGTTTCCATTACTATCTTGTTGTTTTACTTATGGTGTATAAGTATTCATTATAG | 543 | 44.75 | MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCGVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKVMWTNFPLFGFHYYLVVLLMVYKYSL | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 79022391 | 79022933 | - | Hsped.02g29790.1 | Hepe02g2979 | 564480 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g2979 | 180 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 155 | IPR027417 | - | |
Hepe02g2979 | 180 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 180 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Hepe02g2979 | 180 | Pfam | Elongation factor Tu GTP binding domain | 6 | 155 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Hepe02g2979 | 180 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
Hepe02g2979 | 180 | Gene3D | - | 1 | 156 | IPR027417 | - | |
Hepe02g2979 | 180 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Hepe02g2979 | 180 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Hepe02g2979 | 180 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Hepe02g2979 | 180 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Hepe02g2979 | 180 | FunFam | Elongation factor 1-alpha | 1 | 178 | - | - | |
Hepe02g2979 | 180 | PANTHER | TRANSLATION FACTOR | 4 | 156 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2979 | Hepe-Chr2:79022391 | Hepe03g0364 | Hepe-Chr3:5189675 | 6.89e-107 | dispersed | |
Hepe02g2977 | Hepe-Chr2:79016581 | Hepe02g2979 | Hepe-Chr2:79022391 | 1.83e-106 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g2979 | K03231 | - | gmx:100776330 | 315.079 |