Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2979 ATGGGTAAGGAGAAGGTACACATCAACATTGTGGTCATTGGCCACGTCGACTCCGGCAAGTCGACCACCACTGGTCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTTTTGGACAAGCTTAAGGCTGAACGTGAGCGCGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACCACTAAGTATTACTGCACTGTCATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCACAGGCTGACTGTGGTGTTCTTATCATTGACTCTACTACCGGAGGTTTTGAAGCTGGTATTTCCAAGGATGGGCAGACCCGTGAACATGCCCTTCTTGCTTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGGTAATGTGGACTAACTTTCCTTTATTTGGTTTCCATTACTATCTTGTTGTTTTACTTATGGTGTATAAGTATTCATTATAG 543 44.75 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCGVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKVMWTNFPLFGFHYYLVVLLMVYKYSL 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79022391 79022933 - Hsped.02g29790.1 Hepe02g2979 564480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2979 180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 155 IPR027417 -
Hepe02g2979 180 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 180 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g2979 180 Pfam Elongation factor Tu GTP binding domain 6 155 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g2979 180 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Hepe02g2979 180 Gene3D - 1 156 IPR027417 -
Hepe02g2979 180 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g2979 180 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g2979 180 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g2979 180 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g2979 180 FunFam Elongation factor 1-alpha 1 178 - -
Hepe02g2979 180 PANTHER TRANSLATION FACTOR 4 156 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2979 Hepe-Chr2:79022391 Hepe03g0364 Hepe-Chr3:5189675 6.89e-107 dispersed
Hepe02g2977 Hepe-Chr2:79016581 Hepe02g2979 Hepe-Chr2:79022391 1.83e-106 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2979 K03231 - gmx:100776330 315.079