Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2982 ATGGGGAAGAAGGGGGGCTGGTTTTCAGCTGTGAAGAAAGCATTTGCTTCTGAATCTAAGGAAAAGAAAGACCAGAAAACCAACACATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGAATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCCGCCGAGGCAGCCGTGGCAGCGGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACCATCATCCCTCGGTACTCCGGAAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATTCAAGGCCAATCTGTTAAAAGACAAGCAACCACCACATTAAGATGCATGCAGACTCTTGCTCGTGTCCAATCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAAGCTCTTCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTAGTTTTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAACTGAAGCCAGATTAGTTAACAGACAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTAGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCATTGGGGCTGGAGTTGGTTAGAACGATGGATGGCTGCTCGTCCATGGGAGTCTAAGAGCACTGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGATATTTCCAAAACTTACTCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCGACGAGCCAAAAAACGAGCCGACCTCCGAGTCGCCAATCGCCGGCGACACCTACGAAGGCGCAATCGTCGCTATCTGCAGGGAGAAAATTGAAGTCGGCGAGTCCGAGAGGATTCGGCTGGGGAGGAGACGACGATTCCAGAAGCGGATTGAGCGTGAAATCGGAGCGGTACCGGCGACATAGCATCGCCGGATCATCGGTGAGGGACGACGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCTCGATTGTCGAGTCCAATGGGAACGGAGAAGGCGGCGGCGGAAACTCCGGAGAAGGGACCGGCGATTGGCGGCGTAAAGAAGCGGCTCTCGTTCGCCGCCTCGCCGGCTACGGCCACGGCGACTGCGAGGAGACACTCTGGTCCGCCGAAAATAGACGCTAGCCCGATCAAGAATGTTGCTGAGAGAGATTTTACCGGCGAGAGCAGATAG 1461 51.54 MGKKGGWFSAVKKAFASESKEKKDQKTNTSKKRWFGKPKKLETVASAENVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTIIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTSFANNEWDDSTKSKEQTEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESKSTVDYHDRGSVKSAISHATSIGDISKTYSRRDLNLDIKPFPRTPTSQKTSRPPSRQSPATPTKAQSSLSAGRKLKSASPRGFGWGGDDDSRSGLSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKAAAETPEKGPAIGGVKKRLSFAASPATATATARRHSGPPKIDASPIKNVAERDFTGESR 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79044009 79048954 + Hsped.02g29820.1 Hepe02g2982 564483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2982 486 ProSiteProfiles IQ motif profile. 110 138 - -
Hepe02g2982 486 MobiDBLite consensus disorder prediction 320 353 - -
Hepe02g2982 486 MobiDBLite consensus disorder prediction 391 407 - -
Hepe02g2982 486 Coils Coil 173 193 - -
Hepe02g2982 486 MobiDBLite consensus disorder prediction 15 34 - -
Hepe02g2982 486 PANTHER IQ-DOMAIN 5-RELATED 4 433 - -
Hepe02g2982 486 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515(InterPro)
Hepe02g2982 486 MobiDBLite consensus disorder prediction 372 390 - -
Hepe02g2982 486 MobiDBLite consensus disorder prediction 312 486 - -
Hepe02g2982 486 Gene3D iswi atpase 107 145 - -
Hepe02g2982 486 SMART iq_5 109 131 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2982 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2982 Hepe-Chr2:79044009 Hepe09g1233 Hepe-Chr9:15956958 2.84e-34 dispersed
Hepe02g0273 Hepe-Chr2:2662411 Hepe02g2982 Hepe-Chr2:79044009 2.23e-14 transposed
Hepe02g2513 Hepe-Chr2:71787831 Hepe02g2982 Hepe-Chr2:79044009 3.45e-26 transposed
Hepe01g1011 Hepe-Chr1:74744246 Hepe02g2982 Hepe-Chr2:79044009 2.68e-126 wgd
Hepe02g2982 Hepe-Chr2:79044009 Hepe04g0914 Hepe-Chr4:63416213 2.35e-117 wgd
Hepe02g2982 Hepe-Chr2:79044009 Hepe05g0240 Hepe-Chr5:2863966 5.43e-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2982 . 1 480 IQD Protein Family AT3G52290 53.7 2.4e-103 372.9
Hepe09g1233 . 1 396 IQD Protein Family AT3G22190 58.0 3.7e-96 349.0
Hepe01g1892 . 1 440 IQD Protein Family AT2G26180 60.2 1.4e-119 426.8
Hepe04g1898 . 1 279 IQD Protein Family AT2G33990 52.6 1.4e-64 243.4
Hepe07g0994 . 40 215 IQD Protein Family AT2G33990 54.7 8.0e-49 191.0
Hepe07g0994 . 21 230 IQD Protein Family AT3G15050 56.1 1.0e-56 217.2
Hepe02g2513 . 120 472 IQD Protein Family AT5G13460 50.8 5.4e-74 275.4
Hepe03g1505 . 1 398 IQD Protein Family AT3G16490 51.5 4.2e-70 262.3
Hepe09g0820 . 1 396 IQD Protein Family AT3G16490 51.8 1.6e-69 260.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40