Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2983 ATGATGTTGCCGCCGCCATCGCCGCCGCCGATGGTGGTTCTCAGCCCGTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATATGTGTGTTTTAGCGCCTTATTTTCCTCCCACCGAGCCTCTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCTGGCAACGTCATCAAGCTCTTGAAGGAACTCTCTGAAAATCAAAGAGCAGATGCTGCGAGCAGTTTAGTATACGAAGCAAATGCTAGAATTCGAGACCCCGTCTATGGTTGTACGGGCGCAATTTTTCAACTTCAAAATAAAGTAAGCGAGCTCCATGCAGAATTAGCCGTGACAAATGCTGAGATTCATAAGATGCAACTTGAGAATGCAAATTTAGTACCCCTAACTTACACACAAACAAGTAAATTTCAATATCAAGAAGACTCCATCTTGTACCAACAACACTTTCCATTTGAGTTGACTGATTCTAGTCCTCTTCCACATAACAAATCTTCCAACATTGTTTGGGAGGACACATTATGGTCTTGA 531 45.57 MMLPPPSPPPMVVLSPCAACKILRRRCVDMCVLAPYFPPTEPLKFAAVHRIFGAGNVIKLLKELSENQRADAASSLVYEANARIRDPVYGCTGAIFQLQNKVSELHAELAVTNAEIHKMQLENANLVPLTYTQTSKFQYQEDSILYQQHFPFELTDSSPLPHNKSSNIVWEDTLWS 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79051994 79053480 + Hsped.02g29830.1 Hepe02g2983 564484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2983 176 Coils Coil 95 122 - -
Hepe02g2983 176 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Hepe02g2983 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 139 - -
Hepe02g2983 176 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0884 Hepe-Chr1:73034843 Hepe02g2983 Hepe-Chr2:79051994 7.60e-47 dispersed
Hepe02g2983 Hepe-Chr2:79051994 Hepe08g0630 Hepe-Chr8:5603072 5.72e-45 dispersed
Hepe02g2983 Hepe-Chr2:79051994 Hepe08g0862 Hepe-Chr8:7832793 5.73e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55151 PF03195 LOB 3.70E-40 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2983 - - - 0.0