Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3032 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTACTCAGCAACCAAATCAGCTCCAAGGAAGTGGCTGCGAGATCACTAATAATACTCAACAACACCTTCCACCTCCGGCACCGCAAGCTGGCGGTGGCGGAGGTAGCGGTGGAGGCGGTGGACCTGGCTCGATTAGACCTGGGTCGATGACGGATCGAGCCAGGATGGCGAAGATACCGCAACCGGAAGCCGGGCTAAAATGCCCTAGATGCGAGTCAACAAACACGAAGTTTTGTTACTTCAACAACTACAGCCTGACTCAGCCACGCCACTTTTGCAAGACGTGCCGACGCTACTGGACGAGAGGAGGGGCGATGAGGAACGTGCCGGTCGGGGGAGGGTGTCGGCGGTCGAGCAAGAGAAGCAGCAGCAGCAGCAAAGGAAATAGGTCAAAATCTCCGGCGGGTTCAAGCACTTCAACAAGCACTGTGTCATCAAACAGTTGCACAACAGATATAATTAGTCACCAAATGGGTCCTCCTCCACCAAACCATTTTCCCTTTTTGGCTCCAAATAATTTACACAATCTGAGTGATTTTGGGAACATTGGTTTAAACTTTGAAGGCCTTCAAATCCCTTCTTCTTCTTCTTCTTCTTCACTGCCAGAATCATCAATTTTATCAAGTGGAGGAATTACAGATCATCATCATCATCATCACCAATGGAAAATTCCCAGCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCCAATTTCATGGCGGATCAAGCTGATTTCTCAAATTACCAACGTTTGTCAAAGCCATTATTGGAGACTGGGTTTATTGGTGGTAATAATAATCATAATAGCATGAAAATTATGGATCAGGAGACACAAGCTGCAGGGATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCATCAATTCTGGAATTCTACTACTACTACAACAGCAACAGCTGGGAATAATATTGGATGGACGGATCAGATTTCAGATCATTTCAATTCAACTTCTTCCACTTCCCATCTCTTGTAA 1059 44.85 MVFSSVPVFLDPPNWPTQQPNQLQGSGCEITNNTQQHLPPPAPQAGGGGGSGGGGGPGSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSSSSKGNRSKSPAGSSTSTSTVSSNSCTTDIISHQMGPPPPNHFPFLAPNNLHNLSDFGNIGLNFEGLQIPSSSSSSSLPESSILSSGGITDHHHHHHQWKIPSFFANLHQQNGMYSNFMADQADFSNYQRLSKPLLETGFIGGNNNHNSMKIMDQETQAAGINNLSRNFLGIQPNDHQFWNSTTTTTATAGNNIGWTDQISDHFNSTSSTSHLL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79457090 79458737 + Hsped.02g30320.1 Hepe02g3032 564533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3032 352 MobiDBLite consensus disorder prediction 209 232 - -
Hepe02g3032 352 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g3032 352 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 254 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3032 352 MobiDBLite consensus disorder prediction 1 65 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 209 226 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 11 40 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 122 177 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 132 172 - -
Hepe02g3032 352 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g3032 352 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3032 Hepe-Chr2:79457090 Hepe05g0180 Hepe-Chr5:2229298 5.51e-50 dispersed
Hepe02g3032 Hepe-Chr2:79457090 Hepe04g0864 Hepe-Chr4:62891157 1.61e-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55154 PF02701 zf-Dof 4.40E-31 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3032 - - - 0.0