Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3032 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTACTCAGCAACCAAATCAGCTCCAAGGAAGTGGCTGCGAGATCACTAATAATACTCAACAACACCTTCCACCTCCGGCACCGCAAGCTGGCGGTGGCGGAGGTAGCGGTGGAGGCGGTGGACCTGGCTCGATTAGACCTGGGTCGATGACGGATCGAGCCAGGATGGCGAAGATACCGCAACCGGAAGCCGGGCTAAAATGCCCTAGATGCGAGTCAACAAACACGAAGTTTTGTTACTTCAACAACTACAGCCTGACTCAGCCACGCCACTTTTGCAAGACGTGCCGACGCTACTGGACGAGAGGAGGGGCGATGAGGAACGTGCCGGTCGGGGGAGGGTGTCGGCGGTCGAGCAAGAGAAGCAGCAGCAGCAGCAAAGGAAATAGGTCAAAATCTCCGGCGGGTTCAAGCACTTCAACAAGCACTGTGTCATCAAACAGTTGCACAACAGATATAATTAGTCACCAAATGGGTCCTCCTCCACCAAACCATTTTCCCTTTTTGGCTCCAAATAATTTACACAATCTGAGTGATTTTGGGAACATTGGTTTAAACTTTGAAGGCCTTCAAATCCCTTCTTCTTCTTCTTCTTCTTCACTGCCAGAATCATCAATTTTATCAAGTGGAGGAATTACAGATCATCATCATCATCATCACCAATGGAAAATTCCCAGCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCCAATTTCATGGCGGATCAAGCTGATTTCTCAAATTACCAACGTTTGTCAAAGCCATTATTGGAGACTGGGTTTATTGGTGGTAATAATAATCATAATAGCATGAAAATTATGGATCAGGAGACACAAGCTGCAGGGATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCATCAATTCTGGAATTCTACTACTACTACAACAGCAACAGCTGGGAATAATATTGGATGGACGGATCAGATTTCAGATCATTTCAATTCAACTTCTTCCACTTCCCATCTCTTGTAA 1059 44.85 MVFSSVPVFLDPPNWPTQQPNQLQGSGCEITNNTQQHLPPPAPQAGGGGGSGGGGGPGSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSSSSKGNRSKSPAGSSTSTSTVSSNSCTTDIISHQMGPPPPNHFPFLAPNNLHNLSDFGNIGLNFEGLQIPSSSSSSSLPESSILSSGGITDHHHHHHQWKIPSFFANLHQQNGMYSNFMADQADFSNYQRLSKPLLETGFIGGNNNHNSMKIMDQETQAAGINNLSRNFLGIQPNDHQFWNSTTTTTATAGNNIGWTDQISDHFNSTSSTSHLL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79457090 79458737 + Hsped.02g30320.1 Hepe02g3032 564533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3032 352 MobiDBLite consensus disorder prediction 209 232 - -
Hepe02g3032 352 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g3032 352 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 254 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3032 352 MobiDBLite consensus disorder prediction 1 65 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 209 226 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 11 40 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 122 177 - -
Hepe02g3032 352 MobiDBLite consensus disorder prediction 132 172 - -
Hepe02g3032 352 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g3032 352 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3032 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3032 Hepe-Chr2:79457090 Hepe05g0180 Hepe-Chr5:2229298 5.51e-50 dispersed
Hepe02g3032 Hepe-Chr2:79457090 Hepe04g0864 Hepe-Chr4:62891157 1.61e-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1473 . 12 153 C2C2-Dof Transcription Factor Family AT1G51700 55.3 3.0e-37 152.1
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT1G29160 68.8 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT2G34140 64.3 9.8e-40 160.2
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-38 156.0
Hepe05g0180 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.5e-41 165.6
Hepe02g3032 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 64.7 1.4e-37 154.1
Hepe06g1450 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 78.8 5.0e-43 172.2
Hepe08g0797 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 57.7 1.9e-38 157.1
Hepe10g1221 . 57 138 C2C2-Dof Transcription Factor Family AT5G02460 85.4 4.3e-38 156.0
Hepe04g0864 . 34 126 C2C2-Dof Transcription Factor Family AT3G55370 72.3 1.3e-36 151.0
Hepe09g0293 . 24 327 C2C2-Dof Transcription Factor Family AT5G60850 50.5 2.2e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55154 PF02701 zf-Dof 4.40E-31 No_clan Hepe TF