Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3062 ATGGAAGTTCCTGCAAGTTTCAGCCCTATCATTATAGCTTTGAGCTTGGCAATAATTATAATCTGCCATTTTCTTCTGAAACTGTTTGTTACAGCAGCACCACCAAACCCTAATTTGCCTCCTGGCTGCATGGGTTTCCCCTTCGTTGGAGAGACTCTAAGCTTCCTCAAGCCTCACCATTCTAACTCCATTGGAACCTTTCTTCAACACCATTGCTCCAGGTTTGGGAAAGTTTTCAAATCTCATCTATTTGGTTCGGCGACGATAGTGTCATGTGATCGAGAGCTAAACATGTTCATTCTTCAAAACGACGATAAGCTTTTCAAAGTGAGTTATCCGAAGGCCATGCATGGTATTCTCGGAAGCAATTCTTTGATTATCGCCGCCGGCGACACTCACCGGAAGCTGAGAAACGTCGTCGTTAGCTTCATCAGCTGGTGCAAGTCCAAACCCACTTTCCTTCACTCCATCGACAACCTCTCTCTGTCTTTAATGGAGTCCTGGAGATCCCAAACCCATGTACTTTTCTGCAAACAAGTCAAAATGTTTGCTCTAAGTGTTATGGTGAAGGAATTGTTGGGCATCAAAGCAAACGAGTCGATAGGGTCAAAGATATTGGAAGAGTTCGAAACATATATGAAAGGTTTTGTTTCTTTGCCTATAAATCTCCCGGGTACTTCATACTCTAATGCTGTCAAGGCTAGGGAGAGGCTTTCTTGCATTGTGAAAGAGATAATGAGAGAGAGGAGAAGGAGGGGATTGGTGAGAACAATGGAAGGGGGTGATGATGAGGACTTTCTAGAAGTGATAATGTCAAATTGGAAGCTTAATGATGAAGAGATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACTCTCATGGGATTGATTGTATATTTTCTTGCACATTCACCTCCCAATGTTCTTGCAAAATTAAAGGAAGAACACCAAGCAATAAGGATTGGTAAAAGGAATGGAGAATATCTCAATTTGGAAGATTACAAGCAAATGGAGTTCACAAGCAATGTGATACATGAAGGCATGAGATGTGGGAATGTGGTCAAGTTTTTACATAGGGAAGCTCTTAAAGATGTCAAATTCAAAGATATTGTCATACCTTCTGGATGGAAAGTTCATCCCGTTTTCTCAGCCGTTCATCTTGATCCAACCCTTCATCCAAATCCTCAACAATTCAATCCTTGGAGATGGACGGGCTCATTCTTCTTCATCTTTCCCAAAACCCTTTCCCCCTTTCTTCTTTCCGCGCCCTTTCACCAGCCGACGTTCACTCATCATCCGTTCGCTGGCCGCTGCCGTCGCTCATCCGCCGTCCATTTTGACGTCCGACGGTCGAATCCACTGCAGCCATGTTTTTTTGTTATTATAAATTTGAGGATGTTCAAGGAGGAGAGCATTGAAGTTAATTCAGCTACTGAACGCAGCCCAAAATCTAGTAAGAAAAGTGCAAAAAGAAAAAACAAGAAGAAGCAGTTATTGATGGAAGGTGTAGATATCATGGAAATGGAAGAGGTAGGATCTGTTCAGCTGGGGGAGAGCAACATGAACTCTGACAGTGACAAAGTGAAAAAGAAGAAAAAGAGAAAGAAGGGTACTAGACAATGTGTAGAGGAGAGCTCTATCAAGGCTGAGGCAGGAGAATATGAAAGTAAAGCAGAGAGTTTTATGAAAGAGGGTAGTCCTTTCTCTGATGGTGGAAGTGAGAAAAATGAAACTTTTGAAAAGAGGGGAATTGCATTGATAGATGCTGAGAATGAAAGGGCAGACAGCATAGTTAGAGAAAACTCTGGAGGGAAGATTCTAGAGTCTAACAATGGAAAAGCAGAGCAAAGGAATATAAAGAGGAAGAAACGGCTCTTAAAGGAAGCTGCAAATGCAGATATGCGTGGAATTTGTTACTTGAGTCGAGTTCCTCCACACATGGATCCTTTGAGACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAAAATTTATCTTGTACCCGAGGCTGCTGCAAAGCAAGTACAACGAAAGCGTGCAGGAGGGTTTCGAGGACAATTTTTTTCAGAAGGATGGGTTGAATTTACCGATAAAAGAGTTGCCAAGAAGGTGGCTAATATGTTAAATGGTGAACCAATAGGAGGAAAGAAGAAGTCGTCTTTCTACTATGATCTCTGGAACATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAAATGGCTTTAGAACTTTCTGCAGCTAAGAGGGATAGTAGTTCCTATCTTTCTAAAGTCGATAAATCACATGCATTGAATGCCATCGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCGAGGAGATTCAGAAATGAATTCTGAAGTTGCTGATAGCCAGAAACTTCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAGATTCTGCAGCACAAGACAAACCGAGACTATCTAAAAGTACCCTGGCTGGGGTGTTCGGAAGTTCCTAG 2553 42.22 MEVPASFSPIIIALSLAIIIICHFLLKLFVTAAPPNPNLPPGCMGFPFVGETLSFLKPHHSNSIGTFLQHHCSRFGKVFKSHLFGSATIVSCDRELNMFILQNDDKLFKVSYPKAMHGILGSNSLIIAAGDTHRKLRNVVVSFISWCKSKPTFLHSIDNLSLSLMESWRSQTHVLFCKQVKMFALSVMVKELLGIKANESIGSKILEEFETYMKGFVSLPINLPGTSYSNAVKARERLSCIVKEIMRERRRRGLVRTMEGGDDEDFLEVIMSNWKLNDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKEEHQAIRIGKRNGEYLNLEDYKQMEFTSNVIHEGMRCGNVVKFLHREALKDVKFKDIVIPSGWKVHPVFSAVHLDPTLHPNPQQFNPWRWTGSFFFIFPKTLSPFLLSAPFHQPTFTHHPFAGRCRRSSAVHFDVRRSNPLQPCFFVIINLRMFKEESIEVNSATERSPKSSKKSAKRKNKKKQLLMEGVDIMEMEEVGSVQLGESNMNSDSDKVKKKKKRKKGTRQCVEESSIKAEAGEYESKAESFMKEGSPFSDGGSEKNETFEKRGIALIDAENERADSIVRENSGGKILESNNGKAEQRNIKRKKRLLKEAANADMRGICYLSRVPPHMDPLRLRQILSQYGEIQKIYLVPEAAAKQVQRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEPIGGKKKSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALELSAAKRDSSSYLSKVDKSHALNAIEERLKKKQKLRGDSEMNSEVADSQKLPKLIRNFPQTQPVADSAAQDKPRLSKSTLAGVFGSS 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79779298 79788799 + Hsped.02g30620.1 Hepe02g3062 564563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3062 850 SUPERFAMILY RNA-binding domain, RBD 632 724 IPR035979 GO:0003676(InterPro)
Hepe02g3062 850 PANTHER CYTOCHROME P450 26 38 444 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Hepe02g3062 850 SUPERFAMILY Cytochrome P450 36 412 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe02g3062 850 MobiDBLite consensus disorder prediction 479 505 - -
Hepe02g3062 850 Gene3D - 609 727 IPR012677 -
Hepe02g3062 850 Pfam Cytochrome P450 40 410 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe02g3062 850 CDD RRM_ABT1_like 642 739 IPR034353 -
Hepe02g3062 850 Gene3D Cytochrome P450 32 442 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe02g3062 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 642 724 IPR000504 GO:0003723(InterPro)
Hepe02g3062 850 MobiDBLite consensus disorder prediction 520 551 - -
Hepe02g3062 850 SMART rrm1_1 643 729 IPR000504 GO:0003723(InterPro)
Hepe02g3062 850 MobiDBLite consensus disorder prediction 795 850 - -
Hepe02g3062 850 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe02g3062 850 PRINTS E-class P450 group I signature 280 297 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe02g3062 850 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3062 Hepe-Chr2:79779298 Hepe07g0673 Hepe-Chr7:7823065 4.03e-68 dispersed
Hepe02g3062 Hepe-Chr2:79779298 Hepe03g1471 Hepe-Chr3:71482274 3.00e-63 transposed
Hepe02g3062 Hepe-Chr2:79779298 Hepe02g1478 Hepe-Chr2:19193017 1.41e-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3062 K12639 - csv:101215045 626.706