Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3080 ATGGGTTGTTCAAGCTACTCAAACTCACCATGTGCAGCATGCAAGTTCTTAAGAAGAAAATGCTTAGCAGACTGCATATTTGCGGCCTACTTTCCTCCTGAAGAGCCAACCAAATTCACCAATGTTCACAAGATCTTCGGAGCCAGCAATGTGAGCAAGCTCCTCAACGACGTCCAGCCCCATCAGCGCGAGGACGCTGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGCATGAAAGACCCCGTCTACGGCTGCGTCGGGGCCATCTCCGTTCTCCAGCGACAAGTCATTCGCCTGCAGAAGGAGCTCGACGCTACGAATGCTGATTTGGTACGATATGCAGCGGCCGCGGCGGGTCGGCATCATTCTGGTGTGTGTTTTGTTTCTCCTTATTGCCATGATAAAGAGGAAGGGATTTGA 420 51.9 MGCSSYSNSPCAACKFLRRKCLADCIFAAYFPPEEPTKFTNVHKIFGASNVSKLLNDVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYAAAAAGRHHSGVCFVSPYCHDKEEGI 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79972513 79972932 + Hsped.02g30800.1 Hepe02g3080 564581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3080 139 Coils Coil 89 109 - -
Hepe02g3080 139 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Hepe02g3080 139 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Hepe02g3080 139 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3080 Hepe-Chr2:79972513 Hepe08g2048 Hepe-Chr8:57459279 2.16e-55 dispersed
Hepe02g1786 Hepe-Chr2:26266403 Hepe02g3080 Hepe-Chr2:79972513 7.93e-73 wgd
Hepe02g3080 Hepe-Chr2:79972513 Hepe07g2205 Hepe-Chr7:66445971 1.32e-55 wgd
Hepe02g3080 Hepe-Chr2:79972513 Hepe09g0225 Hepe-Chr9:1949857 5.92e-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55157 PF03195 LOB 8.30E-41 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3080 - - - 0.0