Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3102 ATGGCTGGGAATATTTTGATTGATTATAATGGTGCAGTCAAGTTAGCTGATTTTGGAGTCTCCGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCAAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGATTATGAAAGAGATAGGAGATTTTCTAAGTCGTTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGACCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTCAAACAGGCCCGTCCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGCTCCATTAGGGGAACGGTTTAAGAAGCTAAAGGCAAAAGAGGCAGATCTTCTGGGGCAGAACAAGGCTTTATATGGGGAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTCGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACTTGGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAAGAATAATGATTTTAGCTTTCCAGTAGAAGGTTCATCCTTTGAAAGGCTGAATCACCCAACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATGAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTATAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCATTACCACGTCAATACATGTTAGAGAATAAGAGGTCTTTCAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTATTGTCGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACGTTTCATCTGTCGAGGATACATCAGATGGAACTGTTGTTCAACGCAAGGGGCGGTTTAAAGTTACTTCGGCAGAGCTCAGTCCGAAGGGTCCTATGACAGGCTCATTTAGCCCAGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTAATGCCTGCTCTACTCCTCCCATCGATGCAATGCATTTTGCAGCAGAACATCCTGCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAATGACTGGCAAGAATCCAGATGTATCAGAGACCAGTGACCTTCTGCAGATACAACCGGCTTCATTGAGGGAAAGAGAGTTGCATTCTCAGGTCGTTCATCTGCAACAGAGAATTGATAATCTCGTCGAGGAATTAGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAAGACACGTGATTTCCATGGCAAATAAGGAGAGAACATAA 1587 42.03 MAGNILIDYNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKQARPVDYLARTILDGLAPLGERFKKLKAKEADLLGQNKALYGEEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNLEDLDVHTTKQRNKNNDFSFPVEGSSFERLNHPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDISTDSIRPVDRENGRTEGESSGQSGSLPRQYMLENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDTSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLMPALLLPSMQCILQQNILQREEIVKLIKYLEQMTGKNPDVSETSDLLQIQPASLRERELHSQVVHLQQRIDNLVEELEKQKLKNAEFERHVISMANKERT 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 80162758 80180047 - Hsped.02g31020.1 Hepe02g3102 564603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3102 528 Gene3D Transferase(Phosphotransferase) domain 1 2 170 - -
Hepe02g3102 528 SUPERFAMILY Protein kinase-like (PK-like) 3 157 IPR011009 -
Hepe02g3102 528 ProSiteProfiles Protein kinase domain profile. 1 137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3102 528 MobiDBLite consensus disorder prediction 296 320 - -
Hepe02g3102 528 Coils Coil 484 518 - -
Hepe02g3102 528 Pfam Protein kinase domain 4 137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3102 528 SMART serkin_6 1 137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3102 528 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 2 514 IPR047173 GO:0043539(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3102 K08835 - - csv:101205102 987.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3102 Hepe-Chr2:80162758 Hepe06g0942 Hepe-Chr6:57015303 2.99e-101 dispersed
Hepe02g1817 Hepe-Chr2:27204815 Hepe02g3102 Hepe-Chr2:80162758 6.21e-152 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1400 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.9 3.2e-222 768.5
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT1G53165 52.3 5.8e-67 252.7
Hepe01g1400 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.5 1.6e-229 792.7
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT3G15220 50.8 2.6e-67 253.8
Hepe10g1802 . 4 824 MAP Kinase Kinase Kinase Kinase AT1G69220 59.9 5.0e-243 837.8
Hepe02g1817 . 76 655 MAP Kinase Kinase Kinase Kinase AT5G14720 56.4 1.1e-187 653.7
Hepe02g3102 . 2 525 MAP Kinase Kinase Kinase Kinase AT5G14720 61.9 6.3e-175 611.3
Hepe06g0942 . 6 546 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 3.4e-144 509.2
Hepe05g1625 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.6 1.5e-96 350.9
Hepe06g0942 . 7 550 MAP Kinase Kinase Kinase Kinase AT4G24100 68.7 5.5e-201 698.0
Hepe02g1817 . 81 429 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.2e-132 469.2
Hepe06g0942 . 11 550 MAP Kinase Kinase Kinase Kinase AT4G10730 69.9 9.3e-206 713.8
Hepe02g1817 . 82 450 MAP Kinase Kinase Kinase Kinase AT4G10730 63.7 3.9e-135 479.2
Hepe02g1817 . 76 447 MAP Kinase Kinase Kinase Kinase AT1G70430 65.2 2.9e-139 492.7
Hepe02g1286 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.6 2.2e-134 476.5
Hepe06g0942 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.1 1.7e-118 423.7
Hepe02g1286 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 3.9e-217 751.5
Hepe02g1817 . 81 428 MAP Kinase Kinase Kinase Kinase AT1G79640 68.1 7.2e-147 518.1
Hepe02g1817 . 76 402 MAP Kinase Kinase Kinase Kinase AT1G23700 57.0 2.6e-98 356.3
Hepe02g1286 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 1.8e-86 317.0
Hepe06g0942 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.4e-75 278.9
Hepe02g3102 . 2 172 MAP Kinase Kinase Kinase Kinase AT1G23700 58.0 3.0e-49 193.4
Hepe05g1625 . 32 458 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 2.5e-136 482.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72612 PF00069 Pkinase 4.50E-28 CL0016 Hepe PK