Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3127 ATGGAGTTTCAAGAGGGTTTGATGAAGTTTGTGGTTCATAGACATATTAAACCCAACTGGGTTTTGGAGAAGGATTCTTCTTCTCCACCTGTTGCTGTTTCAGAGTTAACCAGTAGTAGTCCCAGACGAAAATGGCGGATTTTTAATCGGTCTTCTTCTTCCCCATTTCCCTTGAAACCCCATTTGAAGGAAATACCCAATGAATTGCTCTGTCCTGTTTCTGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGTCATACTTTCGAAGCTGCCTGTGTTCAAGTTTTCAAAGATTTTGGGTTGAAGCCGATTTTATTAGATGGGTCGAAGCCGGATTTCTCTTCTGTAATCCCGAATCTCGCTCTGAAATCCACCATTTTTAATTGGTGTAAGAGCTCCTCTTCTGAACCTCCGAAACCCCTTGATTTCTCCTCCGCGGAGAAGCTTGTTCGTCAATTCATGGAGGTTCACGGGAAAAGCGATGAGGAATTGATTCAAGGGGTTGCGGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACCGAGGTCACTCGTCGGACTTCTCATTTCCACTCGAGCTCCGATGAATCTGTAAGCGCTGCCGTTCCGACTCTGCCTCTTCCTCTCGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATCACTTCTCTGAACTTGAACTTGCCCGAAGTAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATCGAAGAAGCTGTAACCACGCTGAGGAAAATCACTAAAACTCGAGAGGACACTAGAGTTCATCTCTGTTCTCCTCCGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCGAGGTACACCGGCGTACAGGTGAATTCTGTTGCAGCTCTGGTGAATCTGTCTTTGGACAATTTGAACAAGGTCAAGATCGTACGCTCGGGGATTCTCCCCAATTTGATCGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAAAATGCCGCCGGCGCCATTTTCAGCTTAGCTCTCGAGGACAACAACAAGACGGCGATCGGGGTATTGGGTGCTCTGCCGCCATTGATACGGCTATTGGTATCCGACTCGGAGCAGACTCGGCACGACTCGGCTCTTGCTCTCTACCACTTGTCGCACGTTCAGAGCAACCGTACGAAGCTTGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCGGCCACATGGCCGGCCGAATTTTGCTGATTCTGTGTAATTTAGCAGCGTGTTTCGAGGGTCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGGGAACGAGTTGGACTCTGAGTCTACTCGGGAGAGTTGTGTGGCGGTTCTGTATGGACTGAGTTACGGCGGTTTGAGATTCAAGGGTCTAGCCAAAACCGCCGGAGCTATGGAGGTTTTCATGATGGTGGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAAGTGAAGAGAATCATGGAATTGATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAATTGCTCGAGTCCGGTTGTTTCGGCAGCCGAACTCGGGGTCGACTCGGTGCCGGAATGGACCGATCCACCGCGAACTCGTCCGAATTCTGA 1671 49.97 MEFQEGLMKFVVHRHIKPNWVLEKDSSSPPVAVSELTSSSPRRKWRIFNRSSSSPFPLKPHLKEIPNELLCPVSGSLMADPVIVSSGHTFEAACVQVFKDFGLKPILLDGSKPDFSSVIPNLALKSTIFNWCKSSSSEPPKPLDFSSAEKLVRQFMEVHGKSDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIITSLNLNLPEVEEIIAKLKSPQVIEIEEAVTTLRKITKTREDTRVHLCSPPILSALRSLIVSRYTGVQVNSVAALVNLSLDNLNKVKIVRSGILPNLIDVLKGGSPEVQENAAGAIFSLALEDNNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRTKLVKLGSVPVFLGMVKSGHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRGNELDSESTRESCVAVLYGLSYGGLRFKGLAKTAGAMEVFMMVEKNGSERSKEKVKRIMELMKARDEEAEDVNWEELLESGCFGSRTRGRLGAGMDRSTANSSEF 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 80451869 80453539 - Hsped.02g31270.1 Hepe02g3127 564628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3127 556 PANTHER U BOX DOMAIN-CONTAINING 47 514 - -
Hepe02g3127 556 SUPERFAMILY RING/U-box 59 139 - -
Hepe02g3127 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 136 IPR013083 -
Hepe02g3127 556 Gene3D - 236 514 IPR011989 -
Hepe02g3127 556 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 357 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 FunFam RING-type E3 ubiquitin transferase 237 513 - -
Hepe02g3127 556 SMART arm_5 268 308 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 SMART arm_5 430 473 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 SMART arm_5 350 390 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 SMART arm_5 309 349 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 Pfam Armadillo/beta-catenin-like repeat 310 348 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 Pfam Armadillo/beta-catenin-like repeat 352 389 IPR000225 GO:0005515(InterPro)
Hepe02g3127 556 Pfam U-box domain 65 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g3127 556 SMART Ubox_2 68 131 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g3127 556 SUPERFAMILY ARM repeat 239 500 IPR016024 -
Hepe02g3127 556 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3127 Hepe-Chr2:80451869 Hepe02g3305 Hepe-Chr2:82636552 7.80e-11 dispersed
Hepe02g3127 Hepe-Chr2:80451869 Hepe07g2250 Hepe-Chr7:66888200 2.71e-93 wgd
Hepe02g3127 Hepe-Chr2:80451869 Hepe09g0170 Hepe-Chr9:1354976 7.65e-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3127 - - - 0.0