Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3141 ATGAAGATCTCCAGCTTCTTCTTCCTCACATGGGTTTCTCTGAATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCCTCTACTTTTTGCTTCTCCATCTGTTGATGCAGTTCTAGAAGACGACATCAGGTGCATTCGAGGGGTTAAGGATTCGCTTCTTGATCCTCTCGGAAAGCTCAGTTCATGGGATTTCAAGAACACATCCGTCGGCAATCTCTGCAAAAATTTCGTCGGTCTCTCCTGCTGGAATGACCGTGAGAATCGCATTCTCAGCCTCGAGCTCAGAGATATGAAGCTCTCCGGTTCCATTTCCAAGGACTTGGAGTACTGTGTCAGCCTACAGAGACTGGATCTATCCGGCAATTCCTTTTCCGGCGCCATCCCTTCCAATATTTGTAAGTGGCTTCCCTATGTGGTTAACTTGGATTTGTCCAACAATCAATTTTCCGGCCCTATTCCGGCTGATCTCGCCGGATGTTCGTATCTCAATTCCTTGATTTTGTCTGATAATTCCCTTTCGGGTACAATACCAGTTGAACTTACGAGTTTGGGTAGGCTTAATAAATTTTCTGTTGCGAACAATCATCTCAGTGGTACGATTCCCCCATTTTTCAATAAATTTGGGAAGGAGGATTTTGATGGGAACGGTGATTTATGTGGAGGGCCTGTTGGATCGAGTTGTGGTGGGTTGAGTAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTTTTTGGTGCTGCAGCTTCTCTGTTGTTAGGTTTTGGTTTGTGGTGGTGGTATCACTCTAGAATGAACATGAAGAAGAGAAGGGGATATGATGGGGATGCGATTAATGGGAATTGGGCTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTCAAAGTTAAGTTGGCTGATTTGATGGCTGCTACTAACAATTTCAATTCTGAAAACATTCTAGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCAGATGGCTCTGTGCTCGCTATTAAGCGGCTCAATACCTGCAAGCTCGGCGAGAAGCTGTTTCGGATGGAGATGAACCGGTTAGGATTGATAAGGCACCCGAATTTGACACCCCTTTTGGGATTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGTCCTCTTTGTTACATGGAAATGTTGAGGTATTGGATTGGGCAACTAGGTTTAGGATCGGTCTGGGTGCGGCTAGGGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGAAGACTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTGATGGCTTCGGATTCCCACGACAGTAGTTTTGTTAATGGAGATTTAGGGGAGCTTGGTTACGTTGCTCCCGAATATCCGAGCACCATGGTTGCTTCTTTGAAGGGGGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGATCACAGGCCAAAAACCTCTTGAAGTCACCAGAGCAGAGGAGGGCTATAAGGGTAACTTGGTGGATTGGGTTAGTCAGCTAAGTAGTTCGGGTCGAATTAAGGATGTTATTGATATAGATCTTTGTGGGAAAGGGAACGATGAGGAAATCTTACAATTTCTCAAAATTACAATGAACTGCATTGTTTCTCGGCCCAAGGATAGGTGGTCTATGTATCAGGTTTATCAGTCAATGAAAACAATGGCTAAAGACTACAGTTTCTCTGAACCAGATGATGAATTCCCACTTTTACTTGGCAAGGGAGATACCGACCCGATGTAG 1851 43.65 MKISSFFFLTWVSLNHHHHHLLLLLLLPLLFASPSVDAVLEDDIRCIRGVKDSLLDPLGKLSSWDFKNTSVGNLCKNFVGLSCWNDRENRILSLELRDMKLSGSISKDLEYCVSLQRLDLSGNSFSGAIPSNICKWLPYVVNLDLSNNQFSGPIPADLAGCSYLNSLILSDNSLSGTIPVELTSLGRLNKFSVANNHLSGTIPPFFNKFGKEDFDGNGDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKKRRGYDGDAINGNWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENILVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGLIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNVEVLDWATRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMASDSHDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTRAEEGYKGNLVDWVSQLSSSGRIKDVIDIDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMKTMAKDYSFSEPDDEFPLLLGKGDTDPM 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 80635931 80638765 + Hsped.02g31410.1 Hepe02g3141 564642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3141 616 SUPERFAMILY L domain-like 41 211 - -
Hepe02g3141 616 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Hepe02g3141 616 Pfam Leucine Rich Repeat 188 208 IPR001611 GO:0005515(InterPro)
Hepe02g3141 616 Pfam Leucine Rich Repeat 114 135 IPR001611 GO:0005515(InterPro)
Hepe02g3141 616 Pfam Leucine Rich Repeat 142 161 IPR001611 GO:0005515(InterPro)
Hepe02g3141 616 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 392 610 - -
Hepe02g3141 616 Gene3D Transferase(Phosphotransferase) domain 1 392 604 - -
Hepe02g3141 616 PANTHER RECEPTOR-LIKE PROTEIN 55 88 587 - -
Hepe02g3141 616 Gene3D Ribonuclease Inhibitor 42 231 IPR032675 -
Hepe02g3141 616 ProSiteProfiles Protein kinase domain profile. 317 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3141 616 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 40 230 - -
Hepe02g3141 616 Gene3D Phosphorylase Kinase; domain 1 277 391 - -
Hepe02g3141 616 Pfam Protein tyrosine and serine/threonine kinase 340 524 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g3141 616 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 279 391 - -
Hepe02g3141 616 SUPERFAMILY Protein kinase-like (PK-like) 294 587 IPR011009 -
Hepe02g3141 616 Pfam Leucine rich repeat N-terminal domain 41 84 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3141 Hepe-Chr2:80635931 Hepe07g0174 Hepe-Chr7:1547408 1.40e-73 dispersed
Hepe03g0732 Hepe-Chr3:19331809 Hepe02g3141 Hepe-Chr2:80635931 1.16e-23 dispersed
Hepe08g1464 Hepe-Chr8:17838118 Hepe02g3141 Hepe-Chr2:80635931 5.24e-23 dispersed
Hepe03g2095 Hepe-Chr3:78904871 Hepe02g3141 Hepe-Chr2:80635931 8.24e-138 transposed
Hepe02g3141 Hepe-Chr2:80635931 Hepe08g0621 Hepe-Chr8:5451857 2.86e-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72614 PF07714 PK_Tyr_Ser-Thr 2.20E-28 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3141 - - - 0.0