Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3157 ATGGCTTCCCCTCATCACTCTCATAGCTTTATGTTCCAATCCCGCCCCGCCGATCACCATGAATACGTCTCGTCTACGTCCTTCAACAACATCCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGGGTCGTCCCGTTGATGATGAAAAGATCGATGTCGTTTTCGGGGGTCGAAAACGGGTGCGAGGAAGTGAATGGGGACGAGGGATTGTCTGACGACGGATCGGCGTTGGGAGAGAAGAAGAAGCGTCTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGCTGGGGAATAAGCTTGAGCCTGATAGGAAAATGCAGCTGGCCAAAGCCCTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGAGCCAGGTGGAAGACAAAACAGTTGGAAAGAGATTATGAGGTGTTGAAGAAACAGTTTGAAGCTCTAAAGGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCACAGTTATTAGCAATAAAAACCAAAGACTCCGGCGAGGCAGCGACTGGCGGCGCCGCCGTGAACCTTAAGAAAGAAAACGAACGGTGTTGGAGCAGCGACAACAGTTGCGACATCAACCTGGACATCTCAAGGACACACGCACCAATAACAACCAACAACGGCGGCGGAGGAAGAGGACGTTCCCAACCAGGAATCAAAGACCTGTTTCCGTCGGCGGCGTTCCGGTCCGCCGCCATAACGCAGCTGCTTCAGCACGGGTCTACGAGATCAACGGTGGAGCATCCACAGGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGAATCGAAGAAGAACAACAACAAACTGCAGCAGCTGGGTTTTGGCCATGGACTTCCGATCAAAATTCCCATTTTCATTAA 909 49.72 MASPHHSHSFMFQSRPADHHEYVSSTSFNNIPSCPPHLYFHDGVVPLMMKRSMSFSGVENGCEEVNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPDRKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAQLLAIKTKDSGEAATGGAAVNLKKENERCWSSDNSCDINLDISRTHAPITTNNGGGGRGRSQPGIKDLFPSAAFRSAAITQLLQHGSTRSTVEHPQVIQEESFSQMFNGIEEEQQQTAAAGFWPWTSDQNSHFH 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 80975005 80978089 - Hsped.02g31570.1 Hepe02g3157 564658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3157 302 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Hepe02g3157 302 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Hepe02g3157 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 258 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Hepe02g3157 302 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe02g3157 302 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Hepe02g3157 302 SUPERFAMILY Homeodomain-like 75 138 IPR009057 -
Hepe02g3157 302 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3157 302 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Hepe02g3157 302 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Hepe02g3157 302 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677(InterPro)
Hepe02g3157 302 Gene3D - 74 144 - -
Hepe02g3157 302 Coils Coil 128 169 - -
Hepe02g3157 302 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3157 Hepe-Chr2:80975005 Hepe04g1417 Hepe-Chr4:69830890 8.90e-30 dispersed
Hepe10g1725 Hepe-Chr10:54054519 Hepe02g3157 Hepe-Chr2:80975005 5.50e-54 wgd
Hepe02g3157 Hepe-Chr2:80975005 Hepe07g2281 Hepe-Chr7:67135557 2.38e-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55162 PF00046 Homeodomain 3.80E-15 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3157 K09338 - csv:101212093 528.48