Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3167 ATGTTTAGAGAGGTTTGTGTTTTTGAGAGAGCCATGGATTTAGCTGCCATCACTACTAGTAGTAATAACACCAAATCTCCCGAGGCCGACAGTGATACTCCGACGCGGATAATCCCGCCCTCCTCCGTCAAATCTCTTCCGTTCACCAACGGCGTTCTCAAGCGCCACCTCCATCACACCCACGGCCGTCAACCGGCGGTTCAACCGCTGGTGCTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCACCTTAGGAGCTCATGCTTTGGACGGATGTGGGGAGTTTATGCCTTCCCCTTCCTCCACACCCACCGATCCCACCTCCCTCAAGTGCGCCGCCTGCGGCTGTCACCGCAATTTCCACCGCCGTGACCCGGAGGACCCGATTTCGACTTTGGCCTTGAATACGGCGGCGACTACTCATGTGATCGAGTATCAGCCGCACCACCGGCACCACCCACCTCCGCCTCCACTGGCAGGCAACCGGAGCCCGAATTCGGCGTCGCCTCCGCCGATCTCGTCGTCGTACTACCCATCGGCGCCACATATGTTACTGGCGCTTTCCGCCGGGTTGTCGGCTGGTCATCCGCCGGAAAACGCTCACGGGAATAATTCGTTGCTGATGACGACGCCGAGCCCGAACGCGAGGAAACGGTTCAGGACGAAATTCACGAACGAGCAAAAGGAAAAAATGCTGGAATTTGCAGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAGGATTTGGTTAGAGATTTTTGCAATCAAGTTGATGTTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAACCCGAATCCAATGGCAACACCGTCACTGCCACCCCCACCACCGCCACCACCGCCGTCATCGCGGCCGTCAACAACGACAAAAATGAAGATGGAGCAGATGGGGACTTGCAAATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 990 53.84 MFREVCVFERAMDLAAITTSSNNTKSPEADSDTPTRIIPPSSVKSLPFTNGVLKRHLHHTHGRQPAVQPLVLVTYKECLKNHAATLGAHALDGCGEFMPSPSSTPTDPTSLKCAACGCHRNFHRRDPEDPISTLALNTAATTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSAGHPPENAHGNNSLLMTTPSPNARKRFRTKFTNEQKEKMLEFAERVGWKMQKRDEDLVRDFCNQVDVERGVLKVWMHNNKNTMGKKPESNGNTVTATPTTATTAVIAAVNNDKNEDGADGDLQMHVGSNGSSSSS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 81170491 81171881 - Hsped.02g31670.1 Hepe02g3167 564668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3167 329 MobiDBLite consensus disorder prediction 200 215 - -
Hepe02g3167 329 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Hepe02g3167 329 MobiDBLite consensus disorder prediction 196 215 - -
Hepe02g3167 329 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 126 IPR006456 -
Hepe02g3167 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 276 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe02g3167 329 Pfam ZF-HD protein dimerisation region 73 127 IPR006456 -
Hepe02g3167 329 SUPERFAMILY Homeodomain-like 210 279 IPR009057 -
Hepe02g3167 329 MobiDBLite consensus disorder prediction 304 329 - -
Hepe02g3167 329 Gene3D - 207 279 - -
Hepe02g3167 329 MobiDBLite consensus disorder prediction 148 177 - -
Hepe02g3167 329 FunFam Zinc-finger homeodomain protein 2 205 279 - -
Hepe02g3167 329 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 74 126 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3167 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1975 Hepe-Chr2:35951639 Hepe02g3167 Hepe-Chr2:81170491 5.28e-106 dispersed
Hepe02g2004 Hepe-Chr2:42036196 Hepe02g3167 Hepe-Chr2:81170491 5.28e-106 dispersed
Hepe02g3167 Hepe-Chr2:81170491 Hepe10g1740 Hepe-Chr10:54226269 6.30e-56 dispersed
Hepe02g3166 Hepe-Chr2:81147527 Hepe02g3167 Hepe-Chr2:81170491 3.66e-14 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55166 PF04770 ZF-HD_dimer 1.60E-28 No_clan Hepe TF