Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3167 ATGTTTAGAGAGGTTTGTGTTTTTGAGAGAGCCATGGATTTAGCTGCCATCACTACTAGTAGTAATAACACCAAATCTCCCGAGGCCGACAGTGATACTCCGACGCGGATAATCCCGCCCTCCTCCGTCAAATCTCTTCCGTTCACCAACGGCGTTCTCAAGCGCCACCTCCATCACACCCACGGCCGTCAACCGGCGGTTCAACCGCTGGTGCTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCACCTTAGGAGCTCATGCTTTGGACGGATGTGGGGAGTTTATGCCTTCCCCTTCCTCCACACCCACCGATCCCACCTCCCTCAAGTGCGCCGCCTGCGGCTGTCACCGCAATTTCCACCGCCGTGACCCGGAGGACCCGATTTCGACTTTGGCCTTGAATACGGCGGCGACTACTCATGTGATCGAGTATCAGCCGCACCACCGGCACCACCCACCTCCGCCTCCACTGGCAGGCAACCGGAGCCCGAATTCGGCGTCGCCTCCGCCGATCTCGTCGTCGTACTACCCATCGGCGCCACATATGTTACTGGCGCTTTCCGCCGGGTTGTCGGCTGGTCATCCGCCGGAAAACGCTCACGGGAATAATTCGTTGCTGATGACGACGCCGAGCCCGAACGCGAGGAAACGGTTCAGGACGAAATTCACGAACGAGCAAAAGGAAAAAATGCTGGAATTTGCAGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAGGATTTGGTTAGAGATTTTTGCAATCAAGTTGATGTTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAACCCGAATCCAATGGCAACACCGTCACTGCCACCCCCACCACCGCCACCACCGCCGTCATCGCGGCCGTCAACAACGACAAAAATGAAGATGGAGCAGATGGGGACTTGCAAATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 990 53.84 MFREVCVFERAMDLAAITTSSNNTKSPEADSDTPTRIIPPSSVKSLPFTNGVLKRHLHHTHGRQPAVQPLVLVTYKECLKNHAATLGAHALDGCGEFMPSPSSTPTDPTSLKCAACGCHRNFHRRDPEDPISTLALNTAATTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSAGHPPENAHGNNSLLMTTPSPNARKRFRTKFTNEQKEKMLEFAERVGWKMQKRDEDLVRDFCNQVDVERGVLKVWMHNNKNTMGKKPESNGNTVTATPTTATTAVIAAVNNDKNEDGADGDLQMHVGSNGSSSSS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 81170491 81171881 - Hsped.02g31670.1 Hepe02g3167 564668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3167 329 MobiDBLite consensus disorder prediction 200 215 - -
Hepe02g3167 329 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Hepe02g3167 329 MobiDBLite consensus disorder prediction 196 215 - -
Hepe02g3167 329 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 126 IPR006456 -
Hepe02g3167 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 276 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe02g3167 329 Pfam ZF-HD protein dimerisation region 73 127 IPR006456 -
Hepe02g3167 329 SUPERFAMILY Homeodomain-like 210 279 IPR009057 -
Hepe02g3167 329 MobiDBLite consensus disorder prediction 304 329 - -
Hepe02g3167 329 Gene3D - 207 279 - -
Hepe02g3167 329 MobiDBLite consensus disorder prediction 148 177 - -
Hepe02g3167 329 FunFam Zinc-finger homeodomain protein 2 205 279 - -
Hepe02g3167 329 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 74 126 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1975 Hepe-Chr2:35951639 Hepe02g3167 Hepe-Chr2:81170491 5.28e-106 dispersed
Hepe02g2004 Hepe-Chr2:42036196 Hepe02g3167 Hepe-Chr2:81170491 5.28e-106 dispersed
Hepe02g3167 Hepe-Chr2:81170491 Hepe10g1740 Hepe-Chr10:54226269 6.30e-56 dispersed
Hepe02g3166 Hepe-Chr2:81147527 Hepe02g3167 Hepe-Chr2:81170491 3.66e-14 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55166 PF04770 ZF-HD_dimer 1.60E-28 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3167 - - - 0.0