Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g3218 | ATGGGTGCTGTCTGCTGCTGCTTGAGTGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGCATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAACTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGCGCAACATCTATGAATTCTACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCGTTGCCTTATGATGCTGACCCTAGATACGTTCGTTTGCAACGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCGGAACCTTTAAGAGGTGAAGTAGATGCAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAACGGATCTGCTTGTCTTGAGGATTCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGTTCCCTTCAACTAAATCTACCTCTGGAGCTGGGTATGCTTATACATCCTCAGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAACCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGGTTATTTTTCTCCATTGTATCGTATAAACTTGCTTGTTCAATCACTATCTCACAGCCACCCTATTGGTTGCGTTCTAGTTTCCGATTCAGATTGATGTTTGGATCTTTTTAA | 774 | 41.6 | MGAVCCCLSVEDFEDYVNPNSSAYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYVRLQRDGLISRREKGSSHLHEESEPLRGEVDADSDSLGSAGKWNGSACLEDSKENLGKSSLKFPSTKSTSGAGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVWLFFSIVSYKLACSITISQPPYWLRSSFRFRLMFGSF | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 81758373 | 81763882 | - | Hsped.02g32180.1 | Hepe02g3218 | 564719 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g3218 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 220 | IPR013083 | - | |
Hepe02g3218 | 257 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
Hepe02g3218 | 257 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
Hepe02g3218 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
Hepe02g3218 | 257 | SUPERFAMILY | RING/U-box | 172 | 224 | - | - | |
Hepe02g3218 | 257 | MobiDBLite | consensus disorder prediction | 55 | 89 | - | - | |
Hepe02g3218 | 257 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
Hepe02g3218 | 257 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 221 | - | GO:0004842(PANTHER) | |
Hepe02g3218 | 257 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 154 | 224 | - | - | |
Hepe02g3218 | 257 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
Hepe02g3218 | 257 | CDD | RING-H2_AIRP1-like | 173 | 220 | - | - | |
Hepe02g3218 | 257 | MobiDBLite | consensus disorder prediction | 103 | 129 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g3218 | Hepe-Chr2:81758373 | Hepe06g1528 | Hepe-Chr6:65996446 | 2.19e-19 | dispersed | |
Hepe02g3218 | Hepe-Chr2:81758373 | Hepe03g0088 | Hepe-Chr3:1046018 | 1.45e-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g3218 | - | - | - | 0.0 |