Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3218 ATGGGTGCTGTCTGCTGCTGCTTGAGTGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGCATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAACTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGCGCAACATCTATGAATTCTACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCGTTGCCTTATGATGCTGACCCTAGATACGTTCGTTTGCAACGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCGGAACCTTTAAGAGGTGAAGTAGATGCAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAACGGATCTGCTTGTCTTGAGGATTCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGTTCCCTTCAACTAAATCTACCTCTGGAGCTGGGTATGCTTATACATCCTCAGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAACCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGGTTATTTTTCTCCATTGTATCGTATAAACTTGCTTGTTCAATCACTATCTCACAGCCACCCTATTGGTTGCGTTCTAGTTTCCGATTCAGATTGATGTTTGGATCTTTTTAA 774 41.6 MGAVCCCLSVEDFEDYVNPNSSAYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYVRLQRDGLISRREKGSSHLHEESEPLRGEVDADSDSLGSAGKWNGSACLEDSKENLGKSSLKFPSTKSTSGAGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVWLFFSIVSYKLACSITISQPPYWLRSSFRFRLMFGSF 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 81758373 81763882 - Hsped.02g32180.1 Hepe02g3218 564719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3218 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 220 IPR013083 -
Hepe02g3218 257 SMART ring_2 177 217 IPR001841 -
Hepe02g3218 257 MobiDBLite consensus disorder prediction 55 76 - -
Hepe02g3218 257 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Hepe02g3218 257 SUPERFAMILY RING/U-box 172 224 - -
Hepe02g3218 257 MobiDBLite consensus disorder prediction 55 89 - -
Hepe02g3218 257 Pfam Ring finger domain 176 217 IPR001841 -
Hepe02g3218 257 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 221 - GO:0004842(PANTHER)
Hepe02g3218 257 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Hepe02g3218 257 MobiDBLite consensus disorder prediction 103 123 - -
Hepe02g3218 257 CDD RING-H2_AIRP1-like 173 220 - -
Hepe02g3218 257 MobiDBLite consensus disorder prediction 103 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3218 Hepe-Chr2:81758373 Hepe06g1528 Hepe-Chr6:65996446 2.19e-19 dispersed
Hepe02g3218 Hepe-Chr2:81758373 Hepe03g0088 Hepe-Chr3:1046018 1.45e-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3218 - - - 0.0