Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3235 ATGGGAATGAGGAGAACTGAGGCTACTGCTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATTAATGGCTTGCTATCTCCCAAAGGTGTAAATTATGAAGTTCAAGCTCTGATGAATATAAAAGCTTCTCTTCAAGATCCTCATGGTGTGCTTGAGAATTGGGATGGGGACTCTGTTGACCCATGTAGCTGGACTATGGTTACTTGCTCCCCTGAGAGCCTTGTCATTGGCCTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTTCAAGCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATTACAGGCCCAATTCCCCCAGAGCTTGCGAGGCTCTCAAAGCTTCAAACACTTGATCTATCAAACAACTTCTTCATTGGGGGAATTCCTTCTTCTTTAGGCCATTTGAGAAGCCTACAATACTTGAGGCTTAACAACAACAGTCTTTCTGGGGCAATTCCAATGTCTTTAGCCAACATGACCCAGCTTGCCTTTCTTGATGTATCTTATAATAATATCAGTGGCCCTCTCCCCAGATTTCCCAGCAAAACATTCAACATTGTTGGAAACCCTCTGATCTGTGCAACCGGGTCTGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACACTACACAAACTGGTTTACCTGCTGTGAGATTGAGGAGTCATAAAATGGCCCTTACTTTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTTATATGGTGGAGAAGACGAAGCAATCGACCCACATTCTTCGATGTAAAAGACCGACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCCATTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGACCATACTAGGAAAGGGAGGTTTCGGAAATGTTTACAAAGGAATTCTTTCGGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGTCTAGCCGTGCACCGTCATCTCCTCAGACTATACGGGTTTTGCAACACTCCGAATGAACGGCTTCTTGTTTACCCGTATATGTCTAATGGAAGCGTTGCCTCCCGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGCATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTCCATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTCGACGACTACTGCGAGGCTGTCGTTGGAGATTTCGGGCTGGCAAAGCTTCTAGACCATCAAGATTCACATGTCACGACTGCTGTGCGAGGCACCGTCGGACATATAGCTCCCGAGTATCTCTCCACTGGACAATCGTCAGAGAAAACAGACGTTTTCGGATTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCAAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACTTGGAGAAGAAGCTGGAAGTGCTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAGCTAGAGGAAATGGTTCAAGTGGCTCTTTTGTGCACACAATACCTACCAGGACACAGACCAAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGATACAACAAAATGCAAACCCCATGATTTCTCTTCATCAGATAGATACTCTGATCTCACAGATGACTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1881 45.08 MGMRRTEATASCLVASLLFWASAINGLLSPKGVNYEVQALMNIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPIPPELARLSKLQTLDLSNNFFIGGIPSSLGHLRSLQYLRLNNNSLSGAIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNTTQTGLPAVRLRSHKMALTFGLSLACLCLIVLVFGLFIWWRRRSNRPTFFDVKDRQHEEISLGNLRRFPFRELQIATNNFSSKTILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPNERLLVYPYMSNGSVASRLKGKPVLDWGTRKSIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDTTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 81933331 81937880 - Hsped.02g32350.1 Hepe02g3235 564736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3235 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g3235 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Hepe02g3235 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Hepe02g3235 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Hepe02g3235 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Hepe02g3235 626 SUPERFAMILY L domain-like 35 198 - -
Hepe02g3235 626 Pfam Protein tyrosine and serine/threonine kinase 309 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g3235 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3235 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Hepe02g3235 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Hepe02g3235 626 SMART serkin_6 306 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3235 626 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Hepe02g3235 626 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Hepe02g3235 626 Pfam Leucine Rich repeats (2 copies) 100 140 IPR025875 -
Hepe02g3235 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Hepe02g3235 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Hepe02g3235 626 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2535 Hepe-Chr2:72261259 Hepe02g3235 Hepe-Chr2:81933331 4.44e-266 dispersed
Hepe02g3235 Hepe-Chr2:81933331 Hepe10g0030 Hepe-Chr10:283159 2.30e-230 dispersed
Hepe09g0542 Hepe-Chr9:5108216 Hepe02g3235 Hepe-Chr2:81933331 7.53e-219 transposed
Hepe10g1844 Hepe-Chr10:55155159 Hepe02g3235 Hepe-Chr2:81933331 4.59e-74 wgd
Hepe02g3235 Hepe-Chr2:81933331 Hepe09g0248 Hepe-Chr9:2131131 1.07e-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72620 PF00069 Pkinase 3.90E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3235 - - - 0.0