Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3246 ATGGCTTCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAAATTCCACAGCTTTTTCACCTCCTTCTCCTTCTCCTCCGGCGGAGTCTGCAATATCTCCCTCATCTCCTTCATCTTCTGAGCCAAATCAGACTGGTGAACCTCCTTCATCACCTTCTACTCCTGCAGCTCCACCTCCACAGTCACCAACAACAACAGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCAGTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTCCTCCCTCTGCTGGTTCCTCACCTCCGCCTCCGGAATCATCGCCGTCACCGCCACCACCTTCAACGTCCTCCTCACCACCACCTTCAACTTCAACCCCACCACCACCTTCAACTTCAACATCAACCTCTCCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCAACAACATCACCACCACCTTCCTCTTCATCACAACCTCCTCCAGAGCGATCCACTGCCTCTCCTCCCCCTCCTGATTTATCGCCTCCGCCTCCGCCGCCAGCAGCAGGTGGTTCTCCACCTCCTCAATCCAGTCCTAGACCTCCATCTTCAACTCCCTCTCCCCCTCCCCCTCCCCCTGATATAATTTCATCTTCTCCTCCTCCACCATCTAAGGTCCCAACACCAGCTCCACCAACAGGAGAATCACCTAAAGTATCTCCCCCACCCCCCAAGGTTTCTCCTCCTCCTTCTGATTCTCAATCTCCACCTTTAGGTGATGCCCCTCCACCAAGATCCACAGTACCATCACCTCCTCCTTCAGTCCCTTCACCATCTGCTCCTTCTCCAGTTACTGTTCCTGGTTCTCCAACTAATTCATCTGGTGGACGTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTCCATCAATCAATGCTACCGATGTTACAGCAAATAGCACAACCGCAGGTAATGGGGGTTTCAGCACTGGAACATCTGTGGCAGTTGGCAGCGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTATGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATGCCTTCTCCTTTTTCCTCCCAAAACTCAGATTCCTTATTCCTTAGGCCCCATTCTTCAGCTCCCGTGGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCGTCATCAGAAGGAGGTGGAGTAGGTAATTCAAAAGCGTTTGGTTATGAAGAGCTAAACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGAACCCTTGCAGATGGAAGAGAAGTAGCCGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCTGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTCGGTTATTGTATCTCTGATTATCAAAGATTGCTTGTCTATGATTATGTTCCAAACGATACCCTTCATTACCATCTGCACGGTGCGAACAGGCCAGTTTTGGCTTGGGGAACACGTGTTCAAATTGCTGCTGGTGCAGCCCGTGGAATTGCTTACCTCCATGAAGATTGCCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTCGCAGATTTTGGGCTTGCTAAATTGGCATTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCTCCAGAATATGCAACAAGTGGAAAATTGACGGATAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTACTGGTCGTAAGCCTGTAGATTCTTCTCAGCCTCTAGGGGACGAGAGCTTAGTTGAATGGGCTCGACCGTTGCTTGCACAAGCTATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTTGACAGAGAAATGTTTCGGATGATCGAAGCAGCGGGAGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTAAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTCGCAAATGGGGTGAAACCTGGGCAAAGTGGAGTGTTTGATTCAGCTGAACATTCTGCTCAGATCAGAATGTTTCAAAGAATGGCTTTTGGCAGCCAAGATTACAGTTACGGTTATTCCAATCGAGATCAAAGTCGTAGTCGAAGTCATAGTCAAAGTCAGAGTCAGAATAGCTGGAGTAGAGAAACCAGAGATCAAAGTCCCTCGGCGCCTATTAATCGATCCCGACAATGGAACATCTGA 2379 47.84 MASSPSPSISPPENPSNSTAFSPPSPSPPAESAISPSSPSSSEPNQTGEPPSSPSTPAAPPPQSPTTTVPDAPPPSPPLSPPPVTASPPATPASPPPPPSAGSSPPPPESSPSPPPPSTSSSPPPSTSTPPPPSTSTSTSPPPPSTSTSPPPPSTTSPPPSSSSQPPPERSTASPPPPDLSPPPPPPAAGGSPPPQSSPRPPSSTPSPPPPPPDIISSSPPPPSKVPTPAPPTGESPKVSPPPPKVSPPPSDSQSPPLGDAPPPRSTVPSPPPSVPSPSAPSPVTVPGSPTNSSGGRPVTPPTSVTPERPIPSINATDVTANSTTAGNGGFSTGTSVAVGSVVGVLVLSLVIMAMWFVQKRKRRKKNIPYTMPSPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSKAFGYEELNQATSGFSSNNLLGEGGFGCVYKGTLADGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNDTLHYHLHGANRPVLAWGTRVQIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAGACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEHSAQIRMFQRMAFGSQDYSYGYSNRDQSRSRSHSQSQSQNSWSRETRDQSPSAPINRSRQWNI 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82026244 82032422 + Hsped.02g32460.1 Hepe02g3246 564747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3246 792 ProSitePatterns Protein kinases ATP-binding region signature. 437 459 IPR017441 GO:0005524(InterPro)
Hepe02g3246 792 MobiDBLite consensus disorder prediction 8 33 - -
Hepe02g3246 792 Gene3D Phosphorylase Kinase; domain 1 402 506 - -
Hepe02g3246 792 ProSiteProfiles Protein kinase domain profile. 431 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3246 792 SMART serkin_6 431 707 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g3246 792 MobiDBLite consensus disorder prediction 50 285 - -
Hepe02g3246 792 MobiDBLite consensus disorder prediction 751 792 - -
Hepe02g3246 792 FunFam Proline-rich receptor-like protein kinase PERK8 404 506 - -
Hepe02g3246 792 CDD STKc_IRAK 437 707 - -
Hepe02g3246 792 Pfam Protein tyrosine and serine/threonine kinase 434 704 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g3246 792 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 313 740 IPR047117 -
Hepe02g3246 792 MobiDBLite consensus disorder prediction 1 321 - -
Hepe02g3246 792 FunFam proline-rich receptor-like protein kinase PERK8 507 719 - -
Hepe02g3246 792 SUPERFAMILY Protein kinase-like (PK-like) 414 704 IPR011009 -
Hepe02g3246 792 Gene3D Transferase(Phosphotransferase) domain 1 507 719 - -
Hepe02g3246 792 MobiDBLite consensus disorder prediction 286 301 - -
Hepe02g3246 792 MobiDBLite consensus disorder prediction 34 49 - -
Hepe02g3246 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3246 Hepe-Chr2:82026244 Hepe08g2594 Hepe-Chr8:67789271 1.31e-148 dispersed
Hepe03g0628 Hepe-Chr3:12787815 Hepe02g3246 Hepe-Chr2:82026244 8.89e-73 dispersed
Hepe07g0462 Hepe-Chr7:4773982 Hepe02g3246 Hepe-Chr2:82026244 1.17e-67 dispersed
Hepe07g1396 Hepe-Chr7:46037783 Hepe02g3246 Hepe-Chr2:82026244 2.76e-69 dispersed
Hepe08g0900 Hepe-Chr8:8232869 Hepe02g3246 Hepe-Chr2:82026244 9.41e-73 dispersed
Hepe02g0240 Hepe-Chr2:2426213 Hepe02g3246 Hepe-Chr2:82026244 2.65e-72 transposed
Hepe08g0189 Hepe-Chr8:1711255 Hepe02g3246 Hepe-Chr2:82026244 1.69e-32 transposed
Hepe10g1640 Hepe-Chr10:53099303 Hepe02g3246 Hepe-Chr2:82026244 2.67e-124 transposed
Hepe10g1608 Hepe-Chr10:52799028 Hepe02g3246 Hepe-Chr2:82026244 3.46e-58 transposed
Hepe10g1850 Hepe-Chr10:55220573 Hepe02g3246 Hepe-Chr2:82026244 5.80e-178 wgd
Hepe02g0890 Hepe-Chr2:10655303 Hepe02g3246 Hepe-Chr2:82026244 6.75e-62 wgd
Hepe02g3246 Hepe-Chr2:82026244 Hepe04g0667 Hepe-Chr4:60103329 1.52e-60 wgd
Hepe02g3246 Hepe-Chr2:82026244 Hepe08g0711 Hepe-Chr8:6397764 5.61e-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72621 PF07714 PK_Tyr_Ser-Thr 7.10E-45 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3246 - - - 0.0