Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3275 ATGTTGCTATTTTTGAAGATGAAAAGGTTACTGGGTTTGCGTTTGTTGTTCGTCTTGTTCGTTGTGGCTCCTGTGTTGGTGGGATCTCTGAACACACCTCTGAACGATGACGTTTTGGGCTTGATTGTGTTCAAGGCCGACATTGAAGACCCTGAAGGGAAACTCGGCTCGTGGAATGAAGATGACGATAGTCCCTGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTCGTTGAGCTCAATCTTGATGGCTTCTCTCTCAATGGCAGACTCGGCCGTGGCCTTCTTCAGCTGCAGTTTCTTCGTAAACTCTCTCTTTCCAACAACAATCTTACTGGTAATTTAAGTCCCAATAATGCTCGCTTTGAAAATCTTCGAGTTCTCGATTTAAGCGGCAACAGTTTTTTCGGGATTATTGCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTCGCTAAGAACAAACTTTCTGGGAGAATTCCTGAAAGTTTGGGCTCTTGTTCTAGTCTTGCTGGTGTTAATTTATCTTCTAATCAGTTTTCAGGTGTATTGCCTTCTGGGATTTGGTCCTTGACTGGGCTTCGATCTTTGGATTTGTCTAATAATGTTCTGGAAGGTGAAATTCCACAGGAGGTGAAGGGTATGAATAATTTGAGAGCTGTTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTTCTTTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGACGTTCCGGCGACAATGCAGAAACTTAGTTTATGCAGTAATCTTAATTTAAGAAGGAACTTGTTTGAAGGGAAGGTTCCTGAATGGATTGGTGAAATGGAAGGCCTTCAAATCTTGGACCTTTCAGGGAATAGATTTTCTGGTCAGGTTCCAAGTTCATTTAGGAATCTTCAGAATCTGAAGGTTTTGAATCTTTCTGAAAATGGTTTAACTGGCAGCTTGGCAGAGGCCATAGTTCCTTCTCAAAACCTTTCAGCCATGGATCTCGGTCACGGTTCTCTCACCGGTGTTCTTCCCGCATGGATGCTGAAGCTGGGTTCTCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAGGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCATTTTCTGGTGAGATTTCACCTGAGATTGGGATATTAAGTAACTTGCAGGTGTTGAACCTGTGCAAGAACTCATTTGTTGGGGCTATTCCAGAGAGTATTGGAGGCCTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAAGCATTCCCGTAGCGCTCGGCAGAGATGTATCGTTGAAGGAATTGAGGCTGGAGAAGAACTTGCTGGAGGGTGAAGTCCCAAATTCTATCGGGAACTGTTCTTCACTTGTAACTTTGGACATATCGGAAAACAGATTAACTGGCTCCATACCAGCAGCATTGTCTCAACTGACTAATCTTCAAATTGTGGACTTGTCAACAAACAATCTCAGTGGTGCATTGCCAAAACAGTTGGCCAATCTTCCCAACCTTGTTTTGTTTAACATTTCTCACAACAATCTGCAAGGTGAACTGCCTGCAGGTGCCTTTTTCAACACAATTTCCCCTTCCTCTGTGGCTGGAAATCCTTCTCTTTGTGGTTCTATTGTCAAGAAGTCTTGCCCTGGTGTCCTTCCAAAACCTATTGTTCTCAATCCCAACTCATCCTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAAAATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTTCGATCACCGTCCTTAACTTCCATGTTCGGTCATCTGCAAATCGTCCTGAAGCAGCCATCACATTTTCTGGTGGGGATGACTTCAGCCACTCCCCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGTGAGCCCGACTTCAGTACCGGTGCACACGCCCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGCGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCAACCGGTTGCAATAAAAAAGCTCACTGTTTCAAGTCTTGTCAAATCTCAAGAAGATTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTCTAGAAGGTTATTACTGGACTCCATCCCTGCAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTACAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTCTCATGGAACGAAAGGTTCAACATAATCCTCGGAACAGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTCCTGATTGATAGTTCAGGCGAACCTAAAGTCGGAGATTTTGGCCTCGCAAGATTGTTACCAATGCTCGATCGGTATGTGTTGAGCAGCAAGATACAGAGCGCACTTGGCTATATGGCGCCTGAGTTCGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGACGTGTATGGATTTGGAGTTCTGGTTCTTGAGGTGGTAACAGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGAGCGCTGGAAGAAGGTCGGGTGGAGGAATGCATTGATGAGAGGCTTCAGAGGAATTTTCCATCCGAGGAAGCCATACCAGTAGTGAAACTAGGCTTGATATGCACCTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAGTTGGGATAA 2922 44.52 MLLFLKMKRLLGLRLLFVLFVVAPVLVGSLNTPLNDDVLGLIVFKADIEDPEGKLGSWNEDDDSPCNWVGVKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVLDLSGNSFFGIIADDFFRQCGSLRVISFAKNKLSGRIPESLGSCSSLAGVNLSSNQFSGVLPSGIWSLTGLRSLDLSNNVLEGEIPQEVKGMNNLRAVNLGKNRFSGQIPDGIGSCFLLRSVDLSENSFSGDVPATMQKLSLCSNLNLRRNLFEGKVPEWIGEMEGLQILDLSGNRFSGQVPSSFRNLQNLKVLNLSENGLTGSLAEAIVPSQNLSAMDLGHGSLTGVLPAWMLKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNAFSGEISPEIGILSNLQVLNLCKNSFVGAIPESIGGLKALVFLDLSENQLNGSIPVALGRDVSLKELRLEKNLLEGEVPNSIGNCSSLVTLDISENRLTGSIPAALSQLTNLQIVDLSTNNLSGALPKQLANLPNLVLFNISHNNLQGELPAGAFFNTISPSSVAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKKIILSISALIAIGAAAVILVGVVSITVLNFHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGQPVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDERLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82360636 82364385 + Hsped.02g32750.1 Hepe02g3275 564776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3275 973 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Hepe02g3275 973 SMART LRR_typ_2 125 149 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 222 246 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 509 532 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 294 317 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 198 221 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 437 461 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 318 341 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 533 557 IPR003591 -
Hepe02g3275 973 SMART LRR_typ_2 389 413 IPR003591 -
Hepe02g3275 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 314 583 - -
Hepe02g3275 973 Pfam Leucine Rich Repeat 104 120 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Pfam Leucine Rich Repeat 463 485 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Pfam Protein tyrosine and serine/threonine kinase 692 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g3275 973 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524(InterPro)
Hepe02g3275 973 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 684 766 - -
Hepe02g3275 973 SUPERFAMILY RNI-like 276 561 - -
Hepe02g3275 973 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 767 968 - -
Hepe02g3275 973 Gene3D Ribonuclease Inhibitor 295 582 IPR032675 -
Hepe02g3275 973 SUPERFAMILY Protein kinase-like (PK-like) 693 963 IPR011009 -
Hepe02g3275 973 Pfam Leucine rich repeat 296 352 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Pfam Leucine rich repeat 487 546 IPR001611 GO:0005515(InterPro)
Hepe02g3275 973 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Hepe02g3275 973 CDD STKc_IRAK 696 962 - -
Hepe02g3275 973 PRINTS Leucine-rich repeat signature 509 522 - -
Hepe02g3275 973 PRINTS Leucine-rich repeat signature 440 453 - -
Hepe02g3275 973 Gene3D Phosphorylase Kinase; domain 1 683 766 - -
Hepe02g3275 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 35 313 - -
Hepe02g3275 973 Gene3D Ribonuclease Inhibitor 192 289 IPR032675 -
Hepe02g3275 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 387 964 IPR050647 -
Hepe02g3275 973 SUPERFAMILY L domain-like 53 366 - -
Hepe02g3275 973 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Hepe02g3275 973 ProSiteProfiles Protein kinase domain profile. 690 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3275 Hepe-Chr2:82360636 Hepe07g2279 Hepe-Chr7:67118446 4.83e-54 dispersed
Hepe05g0019 Hepe-Chr5:232394 Hepe02g3275 Hepe-Chr2:82360636 3.25e-219 transposed
Hepe05g1247 Hepe-Chr5:59476002 Hepe02g3275 Hepe-Chr2:82360636 8.21e-109 transposed
Hepe06g1185 Hepe-Chr6:61349035 Hepe02g3275 Hepe-Chr2:82360636 1.79e-83 transposed
Hepe01g0640 Hepe-Chr1:68305799 Hepe02g3275 Hepe-Chr2:82360636 3.47e-233 wgd
Hepe10g1872 Hepe-Chr10:55530981 Hepe02g3275 Hepe-Chr2:82360636 1.94e-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72622 PF00069 Pkinase 9.00E-42 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3275 - - - 0.0