Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3279 ATGGCGACTTCAACAATCTCTTCTCTTTCAATTGCATTCCTCATCCTTCTCCCGACCATCTTCGCCGACTATGGCGCTCTCCAGTCAGGCCACGCCACATTCTACGGCGGCGGGGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACCAACACGGCGGCGTTGAGTACGGCTCTGTTCAACAATGGCCTGAGCTGTGGGTCTTGCTTTGAGATCACTTGCAACAGTGATCCCAAATGGTGTCTTCCCGGAAAAATAATCGTCACCGCCACTAATTTCTGTCCGCCAAATCCTAGTCTCTCCAACGACAATGGCGGCTGGTGCAACGCTCCTCTGCAGCACTTTGACTTGGCTGAGCCTGCTTTTCTTCAAATCGCTCAGTACCGCGCCGGCATCGTCCCTGTCTCCTTCCGAAGAGTAGCATGCGTGAAGAAGGGAGGAATAAGATTCACGATCAACGGCCATTCTTACTTCAACTTGGTGCTTATCACCAACGTCGGCGGCGCCGGCGACATCCACTCGGTGTCGATCAAAGGATCGAAAACCGGATGGCAAGCCATGTCCAGAAATTGGGGTCAGAATTGGCAGAGCAACAATTACTTAAATGGACAGAGCCTCTCTTTCCAAGTCACCACCAGCGACGGCCGCACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAGTTCGGCCAGGCTTTCGAGGGCAGCCAATTCTGA 750 54.13 MATSTISSLSIAFLILLPTIFADYGALQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEITCNSDPKWCLPGKIIVTATNFCPPNPSLSNDNGGWCNAPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVACVKKGGIRFTINGHSYFNLVLITNVGGAGDIHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQAFEGSQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82407301 82408579 + Hsped.02g32790.1 Hepe02g3279 564780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3279 249 PANTHER EXPANSIN-A15 12 249 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 Gene3D - 156 249 IPR036749 -
Hepe02g3279 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Hepe02g3279 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Hepe02g3279 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Hepe02g3279 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Hepe02g3279 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Hepe02g3279 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Hepe02g3279 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Hepe02g3279 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Hepe02g3279 249 CDD DPBB_EXPA_N 28 152 - -
Hepe02g3279 249 FunFam Expansin 157 249 - -
Hepe02g3279 249 SMART dpbb_1 62 147 IPR007112 -
Hepe02g3279 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Hepe02g3279 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Hepe02g3279 249 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Hepe02g3279 249 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Hepe02g3279 249 Gene3D - 19 152 IPR036908 -
Hepe02g3279 249 FunFam Expansin 18 153 - -
Hepe02g3279 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0330 Hepe-Chr1:48956851 Hepe02g3279 Hepe-Chr2:82407301 1.66e-139 dispersed
Hepe01g0331 Hepe-Chr1:49000859 Hepe02g3279 Hepe-Chr2:82407301 2.32e-145 dispersed
Hepe02g3279 Hepe-Chr2:82407301 Hepe09g0111 Hepe-Chr9:892173 1.89e-133 dispersed
Hepe02g3279 Hepe-Chr2:82407301 Hepe10g1755 Hepe-Chr10:54338219 1.66e-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3279 - - - 0.0