Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3302 ATGAGTCTCAGTGATCAATATTCTGATGCAAATTGTTTACATTCCAATTCAATCAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGTTTATAATGAATGTGTTGATTCTTGCAATGATGGAGGCAAGCTAATTCGTAAAGCTCCAGCTAAAGGGTCTAAGAAAGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCACATTGCAAATACAGAGGTGTGAGACAGAGGACATGGGGCAAATGGGTTGCAGAGATCCGCGAACCCAACAGAGGGAGTCGCCTGTGGCTCGGTACCTTCCCTACCGCCATTGAAGCCGCTCTTGCCTACGATGAGGCTGCGAGGTTGATGTACGGCTCGTCTGCTCGTTTGAACCTTCCTAATATTACAAGCAAAGGACAGCTGAAAGGGATTCTTTTAGAGGATTATTTGGGTCTGCGTAACTCAGATTCTTCAACTGCTACTTCGACATGTTCTGAATTGTCAACCTCGAACCAATCTGAGGTCTGTGTGCCTGAGGAGTTTACAGTGAGGCCACGACTTGTCCCCTCGAACATTAAGATTGAAGATGGAGAAGGTGAGTCGAGGACTGCGGATCAGGCTGATCACATTGCGATGAGCTTAGAGATGCAATTGAAACATGAGGATGTGGATGCTAAATATAGTGATCAAGGCAATGATCCAGCAGTCGTGTCAGGAATTGAGATTCCTAGTTTTGATGAGTTGCAGAACTTTCAAATGGATGATATGTTCGAGCTGAAGAACAGGAATCAGGCTTATCACATTGCAACGCCAATGAACTTAGAGAAGCATGAAGATGTCGAAGCTAAATATTGTGATAGAAGCAATGATCAAGCAGTCTTATCAGGAACTGAGATTCCTAGTCTGGATGAGTTGCAGAACTTTCAAATGGATGAAATGTTTGATGTGGAGGAGTTTCTAGGCCTTATAAATAGCGATTCCTTGTATGATCCAAGCTTCTTGGAGGGCAATATGGATGGTTCTAATAACATGGCGCCTTCCCAAATTGCCAATGTTGGGTCTGAGAGACCATCAAGCTTGTCATATCAGTTCCAAAATCCCGACGCGAAGTTGCTTGGAAGTCTCCGACACATGGAGCAAACTCCGGCCGATGACGACTACGAATTCGAATTCGGATTCGATTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCTGCAGTAGATGATTGTGAGAGATACCTGAATTATGAGTTGGGTGGTGACTAA 1284 44.86 MSLSDQYSDANCLHSNSIRKRKSRSRRDRSTVAETLAKWKVYNECVDSCNDGGKLIRKAPAKGSKKGCMKGKGGPLNSHCKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARLMYGSSARLNLPNITSKGQLKGILLEDYLGLRNSDSSTATSTCSELSTSNQSEVCVPEEFTVRPRLVPSNIKIEDGEGESRTADQADHIAMSLEMQLKHEDVDAKYSDQGNDPAVVSGIEIPSFDELQNFQMDDMFELKNRNQAYHIATPMNLEKHEDVEAKYCDRSNDQAVLSGTEIPSLDELQNFQMDEMFDVEEFLGLINSDSLYDPSFLEGNMDGSNNMAPSQIANVGSERPSSLSYQFQNPDAKLLGSLRHMEQTPADDDYEFEFGFDFLKQGREEDLNAAVDDCERYLNYELGGD 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82612079 82614303 + Hsped.02g33020.1 Hepe02g3302 564803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3302 427 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3302 427 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 323 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Hepe02g3302 427 Gene3D AP2/ERF domain 80 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3302 427 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3302 427 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3302 427 SMART rav1_2 81 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3302 427 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3302 427 Pfam AP2 domain 80 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3302 427 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677(InterPro)
Hepe02g3302 427 FunFam Ethylene-responsive transcription factor 2 80 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1648 Hepe-Chr1:81698670 Hepe02g3302 Hepe-Chr2:82612079 2.36e-35 dispersed
Hepe02g3302 Hepe-Chr2:82612079 Hepe08g0491 Hepe-Chr8:4308153 5.33e-56 dispersed
Hepe02g3302 Hepe-Chr2:82612079 Hepe02g3307 Hepe-Chr2:82669279 2.67e-23 proximal
Hepe02g3302 Hepe-Chr2:82612079 Hepe04g0720 Hepe-Chr4:61080408 4.49e-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55176 PF00847 AP2 1.30E-14 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3302 K09286 - csv:101215431 549.666