Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3306 ATGAGATCAGGTAGCCACGAGACTCGTTCTTCATCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCACACCCACTTGCATATTTGCCCCTTATTTCAGGTCCGATGAGCCAAAGAAATTTGCAAAAGTTCACAAAGTGTTTGGAGCGAGTAATGTGAGCAAGATTCTGAGTGAGGTGCCTGAGGAGCAGAGAGAGGAGACTGTGAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTGACAGATCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATTCTTCTTCTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTTCTGATATCACCCAATTTGGATATTTAGGTGACTTCACTCATTTTCCTTATCCATTTAAAGCTTGA 489 43.56 MRSGSHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILSEVPEEQREETVNSLAYEAEARLTDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANSSSLENCVVNMSYGGLSFSGQSSSDITQFGYLGDFTHFPYPFKA 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82641826 82642323 + Hsped.02g33060.1 Hepe02g3306 564807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3306 162 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Hepe02g3306 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 123 - -
Hepe02g3306 162 Coils Coil 92 119 - -
Hepe02g3306 162 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3306 Hepe-Chr2:82641826 Hepe08g2048 Hepe-Chr8:57459279 7.02e-45 dispersed
Hepe01g0685 Hepe-Chr1:69160164 Hepe02g3306 Hepe-Chr2:82641826 1.04e-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55177 PF03195 LOB 9.40E-39 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3306 - - - 0.0