Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g3306 | ATGAGATCAGGTAGCCACGAGACTCGTTCTTCATCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCACACCCACTTGCATATTTGCCCCTTATTTCAGGTCCGATGAGCCAAAGAAATTTGCAAAAGTTCACAAAGTGTTTGGAGCGAGTAATGTGAGCAAGATTCTGAGTGAGGTGCCTGAGGAGCAGAGAGAGGAGACTGTGAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTGACAGATCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATTCTTCTTCTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTTCTGATATCACCCAATTTGGATATTTAGGTGACTTCACTCATTTTCCTTATCCATTTAAAGCTTGA | 489 | 43.56 | MRSGSHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILSEVPEEQREETVNSLAYEAEARLTDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANSSSLENCVVNMSYGGLSFSGQSSSDITQFGYLGDFTHFPYPFKA | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 82641826 | 82642323 | + | Hsped.02g33060.1 | Hepe02g3306 | 564807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g3306 | 162 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Hepe02g3306 | 162 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 12 | 123 | - | - | |
Hepe02g3306 | 162 | Coils | Coil | 92 | 119 | - | - | |
Hepe02g3306 | 162 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g3306 | Hepe-Chr2:82641826 | Hepe08g2048 | Hepe-Chr8:57459279 | 7.02e-45 | dispersed | |
Hepe01g0685 | Hepe-Chr1:69160164 | Hepe02g3306 | Hepe-Chr2:82641826 | 1.04e-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55177 | PF03195 | LOB | 9.40E-39 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g3306 | - | - | - | 0.0 |