Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3339 ATGACGACAATCGAAACCTCCCATGTTGTCCCAATGGATGTAGAACAACAACAACAACAACAAGAACGCCCTCACCGGGTTTCCGATGATGTGCGGCGCTGTTCGGGTCAGTCCAGGGCTGAGATTGTGGGGGCGGCTGAGGCGGAGAAAAGAAGGGGTTCCTCTGTGTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTAGCTGAGATTAAGGTACATTTGGCGAAAATCGAGCGGGATTGTCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATACCCATTGAGTTGGGCTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGTGATATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGAATCAACAGAGCAACGCAATGAGTCAAACGATGCAACGACAGCAACCGCTGCAGCTGCTGTCGTGGTGCCACTGCACTCTACCGAGGTCCGGAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 633 49.45 MTTIETSHVVPMDVEQQQQQQERPHRVSDDVRRCSGQSRAEIVGAAEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKEDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEAESTEQRNESNDATTATAAAAVVVPLHSTEVRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82988698 82991841 + Hsped.02g33390.1 Hepe02g3339 564840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3339 210 PANTHER ZINC FINGER, RING-CH-TYPE 16 209 - -
Hepe02g3339 210 MobiDBLite consensus disorder prediction 1 31 - -
Hepe02g3339 210 ProSiteProfiles Zinc finger RING-CH-type profile. 75 141 IPR011016 GO:0008270(InterPro)
Hepe02g3339 210 Pfam RING-variant domain 83 134 IPR011016 GO:0008270(InterPro)
Hepe02g3339 210 SUPERFAMILY RING/U-box 80 137 - -
Hepe02g3339 210 MobiDBLite consensus disorder prediction 1 18 - -
Hepe02g3339 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Hepe02g3339 210 SMART ringv_2 82 135 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3339 Hepe-Chr2:82988698 Hepe04g1925 Hepe-Chr4:74186486 5.84e-23 dispersed
Hepe04g0085 Hepe-Chr4:28273600 Hepe02g3339 Hepe-Chr2:82988698 1.22e-10 transposed
Hepe10g1294 Hepe-Chr10:48716842 Hepe02g3339 Hepe-Chr2:82988698 3.32e-46 wgd
Hepe02g3339 Hepe-Chr2:82988698 Hepe04g0791 Hepe-Chr4:61956364 3.47e-58 wgd
Hepe02g3339 Hepe-Chr2:82988698 Hepe05g0126 Hepe-Chr5:1475258 1.49e-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3339 - - - 0.0