Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g3339 | ATGACGACAATCGAAACCTCCCATGTTGTCCCAATGGATGTAGAACAACAACAACAACAACAAGAACGCCCTCACCGGGTTTCCGATGATGTGCGGCGCTGTTCGGGTCAGTCCAGGGCTGAGATTGTGGGGGCGGCTGAGGCGGAGAAAAGAAGGGGTTCCTCTGTGTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTAGCTGAGATTAAGGTACATTTGGCGAAAATCGAGCGGGATTGTCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATACCCATTGAGTTGGGCTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGTGATATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGAATCAACAGAGCAACGCAATGAGTCAAACGATGCAACGACAGCAACCGCTGCAGCTGCTGTCGTGGTGCCACTGCACTCTACCGAGGTCCGGAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA | 633 | 49.45 | MTTIETSHVVPMDVEQQQQQQERPHRVSDDVRRCSGQSRAEIVGAAEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKEDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEAESTEQRNESNDATTATAAAAVVVPLHSTEVRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 82988698 | 82991841 | + | Hsped.02g33390.1 | Hepe02g3339 | 564840 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g3339 | 210 | PANTHER | ZINC FINGER, RING-CH-TYPE | 16 | 209 | - | - | |
Hepe02g3339 | 210 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Hepe02g3339 | 210 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 75 | 141 | IPR011016 | GO:0008270(InterPro) | |
Hepe02g3339 | 210 | Pfam | RING-variant domain | 83 | 134 | IPR011016 | GO:0008270(InterPro) | |
Hepe02g3339 | 210 | SUPERFAMILY | RING/U-box | 80 | 137 | - | - | |
Hepe02g3339 | 210 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Hepe02g3339 | 210 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 144 | IPR013083 | - | |
Hepe02g3339 | 210 | SMART | ringv_2 | 82 | 135 | IPR011016 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g3339 | Hepe-Chr2:82988698 | Hepe04g1925 | Hepe-Chr4:74186486 | 5.84e-23 | dispersed | |
Hepe04g0085 | Hepe-Chr4:28273600 | Hepe02g3339 | Hepe-Chr2:82988698 | 1.22e-10 | transposed | |
Hepe10g1294 | Hepe-Chr10:48716842 | Hepe02g3339 | Hepe-Chr2:82988698 | 3.32e-46 | wgd | |
Hepe02g3339 | Hepe-Chr2:82988698 | Hepe04g0791 | Hepe-Chr4:61956364 | 3.47e-58 | wgd | |
Hepe02g3339 | Hepe-Chr2:82988698 | Hepe05g0126 | Hepe-Chr5:1475258 | 1.49e-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g3339 | - | - | - | 0.0 |