Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3366 ATGTTGTCTGAGGAAATCAATAAATTTGAGTTATCTAATCTGTATGAAGCAGATGGTCAGCTCATGAATGTGGCTTATGCATTGAATTTGACAACTAAGAAACAATTAATTGGGAATTCTATGCTCTTCTTGTTGAATTGCACATGTTCCGGAATGTACCGTGTTAAGGACATGAGTTTTGTTTTTCGTGGAACAAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCTGAAAGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCGAACTCGCTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTCTGATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCGGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGGGGGCGTTTACAAGGGTTAAGGCTTCAACTTGCTCTACTTGATCGGGAATTCGATGATTTAGACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTCCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGTGACCCTGTGAATCAGCAAGCTTCATCTTCAGAATCTAATGAGAAAAGACAAGATTCAGTTAATGCTGTTGGCGGTACTAAGACCTCAGAGGATGAACATGAACTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTGCATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGGCAGCAGGGAACGTGCCCTGTTTGTAAATTCAGAGCGGTGACCGGGTGGTCAGAACAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA 1002 42.91 MLSEEINKFELSNLYEADGQLMNVAYALNLTTKKQLIGNSMLFLLNCTCSGMYRVKDMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPVNQQASSSESNEKRQDSVNAVGGTKTSEDEHELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVTGWSEQGQGETDAYMV 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83211672 83214371 + Hsped.02g33660.1 Hepe02g3366 564867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3366 333 SUPERFAMILY RING/U-box 266 321 - -
Hepe02g3366 333 SMART ring_2 272 312 IPR001841 -
Hepe02g3366 333 MobiDBLite consensus disorder prediction 228 263 - -
Hepe02g3366 333 MobiDBLite consensus disorder prediction 233 261 - -
Hepe02g3366 333 CDD RING-H2_PA-TM-RING 271 313 - -
Hepe02g3366 333 PANTHER TARGET OF ERK KINASE MPK-1 59 316 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Hepe02g3366 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 318 IPR013083 -
Hepe02g3366 333 Pfam Ring finger domain 271 313 IPR001841 -
Hepe02g3366 333 ProSiteProfiles Zinc finger RING-type profile. 272 313 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3366 Hepe-Chr2:83211672 Hepe06g0897 Hepe-Chr6:56252158 1.05e-10 dispersed
Hepe02g3366 Hepe-Chr2:83211672 Hepe05g0457 Hepe-Chr5:6040006 3.40e-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3366 K16283 - csv:101216306 488.419