Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe02g3395 | ATGGAGGAAAACTTAAGCCTTGTTTCAGACTCCATGGAATCAGAACCTCAAGAACAAGACAGAGACCCAGAAAGCAATCCTTTAAACCAACCCCTTCTCAAGAGAACCAGAACTCTATCTTCTAGTCCCCTTGCCATTGTTGGAGCCAATGTTTCTCTCATTGAAAGCTTGGATTATGAGATCAATGAGAATGATCTGTTTAAGCATGATTGGAGAAGCAGATCCAAAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACATTGGCTTGTCTTGTTGGACTTCTTACTGGGATCATTGCCACTCTCATCAATCTCGCCATTGAAAACATTGCTGGCTACAAGCTTTTGAAAGTGGTCAGTTACATAAAACAAGAAAGGTACTTAATGGGGCTGCTCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTGTTCTCTGTGTATACTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAACATGTTCGGTGCCACCACGTTGATCGTTAAGATAATTGGGAGCATTGGAGCAGTGTCAGCAGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGGAGCTGCATTGCCTCCTTACTAGGGCAGGGGGGTCCGGACAATTATCGAGTGAAATGGACGTGGCTACGGTATTTCAACAACGATCGGGATCGTCGGGATCTTATCACATGCGGGGCGTCGTCGGGGGTTTGCGCAGCTTTCCGAGCTCCAGTCGGGGGAGTTCTATTTGCACTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCACTGCTGTGGAGGACATTTTTCAGCACAGCCATAGTTGTGGTGGTGCTAAGAACATTCATTGAAATATGCAAGGCAGGAGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATAATGTTTGATGTGAGTGGAGTTTCTGTTAGTTACACTATCATGGACATTATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAATCATCTTTTGCACAAAGTCCTCAGACTTTACAACCTCATCAATCAGAAGGGAAAAATTCCGAAGGTGTTACTGAGCTTAGGAGTATCACTGTTCACATCAATCTGCCAATACAGTCTTCCATACCTTGTCCAATGCACTCCCTGCAACCCTTCTCTTCCAGCTTCCTCCTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCAAAAGGCCATTACAACGACCTCGCCACCCTCCTCCTCACCACCAACGACGACGCCGTTCGAAACATCTTCTCCGTCAACACTCCGGTCGAGTATCGGCCTCTCTCCCTCGTCATCTTCTTCCTCCTCTACTGCATTTTAGCCCTAATCACATTCGGCATTGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATCCTCATGGGCTCCGGCTACGGCCGCCTCATCGGCCTCCTCATGAAACCCTACACCAATCTCGACCAAGGTCTCCTCGCCGTTCTCGGCGCTGCCTCGTTGATGTCCGGATCGATGAGGATGACGGTTTCTCTCTGCGTTATATTCCTCGAACTCACCAATAATCTCCTCCTCCTTCCGATTACGATGATTGTTCTTCTGATTGCCAAAACCGTCGGGGACAGTTTTAACCCTAGTATTTACGATATCATTCTGCATCTGAAGGGGCTTCCGTTCCTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTCGGGGAGCTCGCCGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGGTTGGAGAAAGTGTCGCGCATTGTGGAGGTTCTTAGGAACACCACGCACAATGGTTTCCCTGTGGTGGATGCGGATGCGGTGGTGCCGCCGGTGGGGATGGCGGTGGGGGCGACGGAGCTGCACGGGGTGGTGCTGAGAGCGCATTTGCTACAGGTACTGAAGAAGAAATGGTTCTTGAGAGAGCGGCGGAGGACGGAGGAGTGGGAGGTGAGGGAGAAATTTACATGGGTGGAATTGGCGGAGAGGGGAGAGAAGATTGAAGCGCTTGTAGTGACGAAGGAGGAGATGGAGATGTATGTTGATCTTCATCCTCTTACTAACACGACGCCGTATACGGTGCTGGAGAGCATGTCGGTGGCCAAAGCTCTGGTTCTGTTCCGGCAAGTCGGGCTCCGCCATTTGCTTATTGTGCCCAAATATGAAGCAGCTGGGGTTCCGCCTGTAATTGGGATATTGACGAGGCAGGATTTAAGGCCATACAATATTCTTAGTGCATTTCCTCATCTCGCAAGAATCAAGAGCCATGAGAAATGGAACTGA | 2355 | 50.06 | MEENLSLVSDSMESEPQEQDRDPESNPLNQPLLKRTRTLSSSPLAIVGANVSLIESLDYEINENDLFKHDWRSRSKVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVSYIKQERYLMGLLYFTTANFLLTFVAAVLCVYFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYTIMDIIPVAIIGLLGGFLGSLYNHLLHKVLRLYNLINQKGKIPKVLLSLGVSLFTSICQYSLPYLVQCTPCNPSLPASSCPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSVNTPVEYRPLSLVIFFLLYCILALITFGIAVPSGLFLPIILMGSGYGRLIGLLMKPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLRNTTHNGFPVVDADAVVPPVGMAVGATELHGVVLRAHLLQVLKKKWFLRERRRTEEWEVREKFTWVELAERGEKIEALVVTKEEMEMYVDLHPLTNTTPYTVLESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLARIKSHEKWN | 784 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 83409427 | 83414667 | - | Hsped.02g33950.1 | Hepe02g3395 | 564896 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe02g3395 | 784 | FunFam | Chloride channel ClC3 | 78 | 395 | - | - | |
| Hepe02g3395 | 784 | SUPERFAMILY | CBS-domain pair | 581 | 763 | IPR046342 | - | |
| Hepe02g3395 | 784 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 30 | 764 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) | |
| Hepe02g3395 | 784 | Gene3D | Clc chloride channel | 77 | 579 | - | - | |
| Hepe02g3395 | 784 | PRINTS | Plant CLC chloride channel signature | 285 | 295 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Plant CLC chloride channel signature | 60 | 68 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Plant CLC chloride channel signature | 428 | 444 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Plant CLC chloride channel signature | 271 | 279 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Plant CLC chloride channel signature | 303 | 310 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe02g3395 | 784 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 597 | 765 | - | - | |
| Hepe02g3395 | 784 | SUPERFAMILY | Clc chloride channel | 64 | 579 | IPR014743 | - | |
| Hepe02g3395 | 784 | Gene3D | - | 581 | 770 | IPR046342 | - | |
| Hepe02g3395 | 784 | ProSiteProfiles | CBS domain profile. | 711 | 776 | IPR000644 | - | |
| Hepe02g3395 | 784 | SMART | cbs_1 | 714 | 767 | IPR000644 | - | |
| Hepe02g3395 | 784 | SMART | cbs_1 | 599 | 659 | IPR000644 | - | |
| Hepe02g3395 | 784 | CDD | ClC_6_like | 55 | 577 | - | - | |
| Hepe02g3395 | 784 | PRINTS | Chloride channel signature | 508 | 524 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Chloride channel signature | 155 | 172 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Chloride channel signature | 476 | 496 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Chloride channel signature | 526 | 545 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Chloride channel signature | 564 | 578 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Chloride channel signature | 250 | 269 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | PRINTS | Chloride channel signature | 186 | 205 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | Pfam | Voltage gated chloride channel | 143 | 557 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe02g3395 | 784 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Hepe02g3395 | 784 | Pfam | CBS domain | 712 | 763 | IPR000644 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe02g3395 | Hepe-Chr2:83409427 | Hepe08g2504 | Hepe-Chr8:66312765 | 1.80e-226 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe02g3395 | K05016 | - | csv:101210008 | 1414.44 |