Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3408 ATGGATAATTACGAGCAAATATTGTTTCCAGCTTCTTCTTCATCCTCTAAGAATTCATTGCCAAAAGCCATGGAGTTATTTACAGACAGAACAGAGGAAGAAGAAATGGAAATTATTAGTATGGAAAGTGAAGGGAAATTGAAGAAGAAGATGAGAAACCCGAGATTTGCGTTTGAAACTAGAAGCCAGGTTGATGTTCTTGACGATGGCTACCGTTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACAACAAGTTTCCCAGGAGCTACTATAAGTGTTCGCATGAAGGATGTAAAGTGAAGAAGCAAATTCAACGATTAACAAATGATGAAGGCATAGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATTCAAAAGCCTCAAGATAACTTTCAACATATCTTGACCCACATGCAAATTTACCCTTCCTTTTAA 441 37.41 MDNYEQILFPASSSSSKNSLPKAMELFTDRTEEEEMEIISMESEGKLKKKMRNPRFAFETRSQVDVLDDGYRWRKYGQKAVKNNKFPRSYYKCSHEGCKVKKQIQRLTNDEGIVLTTYEGVHSHPIQKPQDNFQHILTHMQIYPSF 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83519531 83521443 - Hsped.02g34080.1 Hepe02g3408 564909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3408 146 Gene3D WRKY domain 52 127 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 SMART WRKY_cls 67 126 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 Pfam WRKY DNA -binding domain 68 125 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 FunFam WRKY transcription factor 57 53 127 - -
Hepe02g3408 146 SUPERFAMILY WRKY DNA-binding domain 60 126 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 127 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1696 Hepe-Chr2:23064225 Hepe02g3408 Hepe-Chr2:83519531 1.28e-53 dispersed
Hepe02g3408 Hepe-Chr2:83519531 Hepe05g2102 Hepe-Chr5:71598058 7.86e-34 dispersed
Hepe02g3408 Hepe-Chr2:83519531 Hepe05g1187 Hepe-Chr5:57725446 2.43e-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55184 PF03106 WRKY 9.30E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3408 - - - 0.0