Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g3408 | ATGGATAATTACGAGCAAATATTGTTTCCAGCTTCTTCTTCATCCTCTAAGAATTCATTGCCAAAAGCCATGGAGTTATTTACAGACAGAACAGAGGAAGAAGAAATGGAAATTATTAGTATGGAAAGTGAAGGGAAATTGAAGAAGAAGATGAGAAACCCGAGATTTGCGTTTGAAACTAGAAGCCAGGTTGATGTTCTTGACGATGGCTACCGTTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACAACAAGTTTCCCAGGAGCTACTATAAGTGTTCGCATGAAGGATGTAAAGTGAAGAAGCAAATTCAACGATTAACAAATGATGAAGGCATAGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATTCAAAAGCCTCAAGATAACTTTCAACATATCTTGACCCACATGCAAATTTACCCTTCCTTTTAA | 441 | 37.41 | MDNYEQILFPASSSSSKNSLPKAMELFTDRTEEEEMEIISMESEGKLKKKMRNPRFAFETRSQVDVLDDGYRWRKYGQKAVKNNKFPRSYYKCSHEGCKVKKQIQRLTNDEGIVLTTYEGVHSHPIQKPQDNFQHILTHMQIYPSF | 146 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 83519531 | 83521443 | - | Hsped.02g34080.1 | Hepe02g3408 | 564909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g3408 | 146 | Gene3D | WRKY domain | 52 | 127 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe02g3408 | 146 | SMART | WRKY_cls | 67 | 126 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe02g3408 | 146 | ProSiteProfiles | WRKY domain profile. | 62 | 127 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe02g3408 | 146 | Pfam | WRKY DNA -binding domain | 68 | 125 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe02g3408 | 146 | FunFam | WRKY transcription factor 57 | 53 | 127 | - | - | |
Hepe02g3408 | 146 | SUPERFAMILY | WRKY DNA-binding domain | 60 | 126 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe02g3408 | 146 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 16 | 127 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g1696 | Hepe-Chr2:23064225 | Hepe02g3408 | Hepe-Chr2:83519531 | 1.28e-53 | dispersed | |
Hepe02g3408 | Hepe-Chr2:83519531 | Hepe05g2102 | Hepe-Chr5:71598058 | 7.86e-34 | dispersed | |
Hepe02g3408 | Hepe-Chr2:83519531 | Hepe05g1187 | Hepe-Chr5:57725446 | 2.43e-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55184 | PF03106 | WRKY | 9.30E-26 | CL0274 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g3408 | - | - | - | 0.0 |