Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3408 ATGGATAATTACGAGCAAATATTGTTTCCAGCTTCTTCTTCATCCTCTAAGAATTCATTGCCAAAAGCCATGGAGTTATTTACAGACAGAACAGAGGAAGAAGAAATGGAAATTATTAGTATGGAAAGTGAAGGGAAATTGAAGAAGAAGATGAGAAACCCGAGATTTGCGTTTGAAACTAGAAGCCAGGTTGATGTTCTTGACGATGGCTACCGTTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACAACAAGTTTCCCAGGAGCTACTATAAGTGTTCGCATGAAGGATGTAAAGTGAAGAAGCAAATTCAACGATTAACAAATGATGAAGGCATAGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATTCAAAAGCCTCAAGATAACTTTCAACATATCTTGACCCACATGCAAATTTACCCTTCCTTTTAA 441 37.41 MDNYEQILFPASSSSSKNSLPKAMELFTDRTEEEEMEIISMESEGKLKKKMRNPRFAFETRSQVDVLDDGYRWRKYGQKAVKNNKFPRSYYKCSHEGCKVKKQIQRLTNDEGIVLTTYEGVHSHPIQKPQDNFQHILTHMQIYPSF 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83519531 83521443 - Hsped.02g34080.1 Hepe02g3408 564909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3408 146 Gene3D WRKY domain 52 127 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 SMART WRKY_cls 67 126 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 Pfam WRKY DNA -binding domain 68 125 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 FunFam WRKY transcription factor 57 53 127 - -
Hepe02g3408 146 SUPERFAMILY WRKY DNA-binding domain 60 126 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g3408 146 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 127 IPR044810 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3408 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1696 Hepe-Chr2:23064225 Hepe02g3408 Hepe-Chr2:83519531 1.28e-53 dispersed
Hepe02g3408 Hepe-Chr2:83519531 Hepe05g2102 Hepe-Chr5:71598058 7.86e-34 dispersed
Hepe02g3408 Hepe-Chr2:83519531 Hepe05g1187 Hepe-Chr5:57725446 2.43e-53 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2333 . 182 449 WRKY Transcription Factor Family AT4G12020 51.3 2.1e-63 242.3
Hepe02g0291 . 104 352 WRKY Transcription Factor Family AT2G04880 57.9 8.5e-78 288.1
Hepe02g3191 . 13 496 WRKY Transcription Factor Family AT2G03340 50.9 5.1e-116 415.2
Hepe10g1775 . 26 495 WRKY Transcription Factor Family AT2G03340 51.1 1.5e-115 413.7
Hepe06g0539 . 211 463 WRKY Transcription Factor Family AT2G03340 53.7 2.0e-64 243.8
Hepe10g1368 . 225 429 WRKY Transcription Factor Family AT2G03340 52.7 5.5e-46 182.6
Hepe10g1775 . 112 495 WRKY Transcription Factor Family AT1G13960 55.6 6.3e-97 351.3
Hepe02g3191 . 132 496 WRKY Transcription Factor Family AT1G13960 51.2 1.2e-82 303.9
Hepe06g0539 . 211 464 WRKY Transcription Factor Family AT1G13960 51.7 1.3e-65 247.3
Hepe05g0048 . 154 369 WRKY Transcription Factor Family AT1G13960 51.0 1.3e-60 230.7
Hepe10g1368 . 224 429 WRKY Transcription Factor Family AT1G13960 51.4 7.6e-50 194.9
Hepe02g2333 . 182 449 WRKY Transcription Factor Family AT4G12020 51.3 2.1e-63 242.3
Hepe06g0539 . 31 578 WRKY Transcription Factor Family AT4G26640 53.5 8.7e-140 494.2
Hepe05g0048 . 140 368 WRKY Transcription Factor Family AT5G07100 55.4 1.0e-62 236.9
Hepe08g0694 . 152 366 WRKY Transcription Factor Family AT5G07100 56.2 4.0e-62 235.0
Hepe10g1368 . 222 429 WRKY Transcription Factor Family AT5G07100 54.1 8.3e-52 200.7
Hepe09g0577 . 121 509 WRKY Transcription Factor Family AT4G30935 53.8 2.2e-102 369.8
Hepe06g1242 . 326 611 WRKY Transcription Factor Family AT2G38470 50.3 2.9e-66 250.0
Hepe10g1775 . 203 450 WRKY Transcription Factor Family AT2G38470 53.3 1.1e-65 248.1
Hepe06g0539 . 219 461 WRKY Transcription Factor Family AT2G38470 52.3 4.6e-64 242.7
Hepe10g1368 . 231 429 WRKY Transcription Factor Family AT2G38470 63.7 5.6e-62 235.7
Hepe02g3191 . 224 452 WRKY Transcription Factor Family AT2G38470 52.8 7.3e-62 235.3
Hepe02g3408 . 7 146 WRKY Transcription Factor Family AT3G01970 55.0 1.4e-39 159.5
Hepe02g1696 . 79 170 WRKY Transcription Factor Family AT3G01970 77.2 2.1e-38 155.6
Hepe05g1187 . 133 224 WRKY Transcription Factor Family AT3G01970 75.0 2.7e-38 155.2
Hepe02g1294 . 6 275 WRKY Transcription Factor Family AT1G80840 57.4 5.3e-73 271.6
Hepe02g0232 . 44 504 WRKY Transcription Factor Family AT1G62300 50.5 1.8e-103 373.6
Hepe07g0482 . 83 379 WRKY Transcription Factor Family AT1G68150 50.6 1.5e-61 233.8
Hepe09g0135 . 245 339 WRKY Transcription Factor Family AT1G68150 81.1 5.1e-41 165.6
Hepe07g2287 . 222 379 WRKY Transcription Factor Family AT1G68150 56.6 1.5e-40 164.1
Hepe04g1747 . 317 414 WRKY Transcription Factor Family AT1G68150 75.5 1.5e-37 154.1
Hepe04g1747 . 57 557 WRKY Transcription Factor Family AT4G22070 51.6 1.3e-106 384.0
Hepe07g0482 . 228 344 WRKY Transcription Factor Family AT4G22070 69.5 1.4e-39 161.4
Hepe09g0135 . 236 406 WRKY Transcription Factor Family AT4G22070 52.9 5.8e-38 156.0
Hepe04g1747 . 118 558 WRKY Transcription Factor Family AT4G04450 52.4 7.1e-95 344.7
Hepe02g0232 . 99 494 WRKY Transcription Factor Family AT4G04450 51.4 2.6e-89 326.2
Hepe09g0135 . 245 415 WRKY Transcription Factor Family AT4G04450 55.0 4.1e-42 169.5
Hepe02g0232 . 272 360 WRKY Transcription Factor Family AT1G18860 76.4 2.2e-37 154.1
Hepe05g2102 . 106 216 WRKY Transcription Factor Family AT2G44745 82.5 9.9e-53 203.8
Hepe04g1154 . 120 222 WRKY Transcription Factor Family AT2G44745 72.8 4.8e-39 158.3
Hepe10g0780 . 147 233 WRKY Transcription Factor Family AT2G44745 81.6 3.4e-37 152.1
Hepe10g0780 . 133 235 WRKY Transcription Factor Family AT4G39410 80.8 3.4e-43 172.6
Hepe04g1154 . 118 224 WRKY Transcription Factor Family AT4G39410 74.8 1.4e-41 167.2
Hepe02g1159 . 122 275 WRKY Transcription Factor Family AT2G47260 50.8 5.3e-37 152.1
Hepe07g0768 . 59 170 WRKY Transcription Factor Family AT5G41570 70.5 3.4e-43 171.8
Hepe05g1979 . 94 205 WRKY Transcription Factor Family AT5G41570 63.4 8.2e-37 150.6
Hepe04g1972 . 98 263 WRKY Transcription Factor Family AT4G18170 56.3 1.6e-43 173.7
Hepe02g0037 . 30 228 WRKY Transcription Factor Family AT4G18170 50.5 8.2e-40 161.4
Hepe03g0037 . 126 222 WRKY Transcription Factor Family AT4G18170 75.3 1.4e-36 150.6
Hepe05g1368 . 147 325 WRKY Transcription Factor Family AT5G49520 55.7 9.6e-46 181.4
Hepe02g0037 . 138 252 WRKY Transcription Factor Family AT5G49520 67.8 6.7e-39 158.7
Hepe07g0768 . 69 172 WRKY Transcription Factor Family AT1G64000 74.8 2.9e-43 172.2
Hepe10g0586 . 134 304 WRKY Transcription Factor Family AT1G69310 59.4 1.4e-46 183.7
Hepe03g0037 . 125 221 WRKY Transcription Factor Family AT1G69310 76.3 6.3e-39 158.3
Hepe04g1972 . 97 254 WRKY Transcription Factor Family AT1G29860 57.0 4.1e-43 172.2
Hepe02g0037 . 138 294 WRKY Transcription Factor Family AT1G29860 56.4 9.5e-40 161.0
Hepe05g1187 . 133 224 WRKY Transcription Factor Family AT5G13080 85.9 1.4e-42 169.5
Hepe02g1696 . 76 172 WRKY Transcription Factor Family AT5G13080 82.5 5.2e-42 167.5
Hepe02g3408 . 48 146 WRKY Transcription Factor Family AT5G13080 74.7 1.3e-40 162.9
Hepe01g2092 . 1 288 WRKY Transcription Factor Family AT4G31550 62.0 1.5e-82 303.1
Hepe09g0437 . 1 236 WRKY Transcription Factor Family AT4G31550 51.5 3.2e-53 205.7
Hepe01g2092 . 1 344 WRKY Transcription Factor Family AT2G24570 61.0 4.3e-105 378.3
Hepe09g0437 . 1 278 WRKY Transcription Factor Family AT2G24570 50.3 3.2e-68 255.8
Hepe03g2055 . 1 338 WRKY Transcription Factor Family AT2G30590 50.3 1.4e-86 317.0
Hepe06g1960 . 1 337 WRKY Transcription Factor Family AT2G30590 53.0 1.4e-75 280.4
Hepe01g1792 . 267 426 WRKY Transcription Factor Family AT2G30590 59.3 6.3e-47 185.3
Hepe04g1263 . 135 289 WRKY Transcription Factor Family AT2G30590 61.1 1.2e-45 181.0
Hepe08g1152 . 177 302 WRKY Transcription Factor Family AT2G30590 67.2 1.7e-44 177.2
Hepe09g0437 . 118 275 WRKY Transcription Factor Family AT2G30590 53.0 1.8e-41 167.2
Hepe01g2092 . 169 328 WRKY Transcription Factor Family AT2G30590 55.6 2.3e-41 166.8
Hepe03g2055 . 1 338 WRKY Transcription Factor Family AT5G28650 53.2 3.2e-79 292.4
Hepe04g1263 . 132 289 WRKY Transcription Factor Family AT5G28650 59.5 1.3e-43 174.1
Hepe01g1792 . 252 427 WRKY Transcription Factor Family AT5G28650 51.6 4.1e-42 169.1
Hepe08g1152 . 167 304 WRKY Transcription Factor Family AT5G28650 60.9 9.1e-42 167.9
Hepe07g1659 . 6 287 WRKY Transcription Factor Family AT1G30650 50.6 2.5e-60 229.9
Hepe04g2070 . 234 349 WRKY Transcription Factor Family AT1G30650 86.2 1.4e-55 214.2
Hepe06g0728 . 162 266 WRKY Transcription Factor Family AT4G01250 66.7 9.4e-38 154.5
Hepe06g0728 . 162 265 WRKY Transcription Factor Family AT5G52830 76.9 2.1e-44 176.8
Hepe07g1659 . 5 284 WRKY Transcription Factor Family AT2G34830 51.1 2.6e-60 229.9
Hepe04g2070 . 226 494 WRKY Transcription Factor Family AT2G34830 64.1 2.4e-58 223.4
Hepe07g1840 . 56 261 WRKY Transcription Factor Family AT1G29280 52.2 1.2e-49 193.7
Hepe02g0116 . 16 278 WRKY Transcription Factor Family AT1G29280 51.1 9.6e-47 184.1
Hepe02g0116 . 1 293 WRKY Transcription Factor Family AT3G58710 56.3 2.9e-54 209.1
Hepe02g0291 . 104 352 WRKY Transcription Factor Family AT2G04880 57.9 8.5e-78 288.1
Hepe01g2092 . 1 288 WRKY Transcription Factor Family AT4G31550 62.0 1.5e-82 303.1
Hepe09g0437 . 1 236 WRKY Transcription Factor Family AT4G31550 51.5 3.2e-53 205.7
Hepe05g2102 . 106 216 WRKY Transcription Factor Family AT2G44745 82.5 9.9e-53 203.8
Hepe04g1154 . 120 222 WRKY Transcription Factor Family AT2G44745 72.8 4.8e-39 158.3
Hepe10g0780 . 147 233 WRKY Transcription Factor Family AT2G44745 81.6 3.4e-37 152.1
Hepe10g0780 . 133 235 WRKY Transcription Factor Family AT4G39410 80.8 3.4e-43 172.6
Hepe04g1154 . 118 224 WRKY Transcription Factor Family AT4G39410 74.8 1.4e-41 167.2
Hepe07g1659 . 6 287 WRKY Transcription Factor Family AT1G30650 50.6 2.5e-60 229.9
Hepe04g2070 . 234 349 WRKY Transcription Factor Family AT1G30650 86.2 1.4e-55 214.2
Hepe01g2092 . 1 344 WRKY Transcription Factor Family AT2G24570 61.0 4.3e-105 378.3
Hepe09g0437 . 1 278 WRKY Transcription Factor Family AT2G24570 50.3 3.2e-68 255.8
Hepe02g2333 . 182 449 WRKY Transcription Factor Family AT4G12020 51.3 2.1e-63 242.3
Hepe06g0539 . 31 578 WRKY Transcription Factor Family AT4G26640 53.5 8.7e-140 494.2
Hepe03g2055 . 1 338 WRKY Transcription Factor Family AT2G30590 50.3 1.4e-86 317.0
Hepe06g1960 . 1 337 WRKY Transcription Factor Family AT2G30590 53.0 1.4e-75 280.4
Hepe01g1792 . 267 426 WRKY Transcription Factor Family AT2G30590 59.3 6.3e-47 185.3
Hepe04g1263 . 135 289 WRKY Transcription Factor Family AT2G30590 61.1 1.2e-45 181.0
Hepe08g1152 . 177 302 WRKY Transcription Factor Family AT2G30590 67.2 1.7e-44 177.2
Hepe09g0437 . 118 275 WRKY Transcription Factor Family AT2G30590 53.0 1.8e-41 167.2
Hepe01g2092 . 169 328 WRKY Transcription Factor Family AT2G30590 55.6 2.3e-41 166.8
Hepe06g0728 . 162 266 WRKY Transcription Factor Family AT4G01250 66.7 9.4e-38 154.5
Hepe02g1159 . 122 275 WRKY Transcription Factor Family AT2G47260 50.8 5.3e-37 152.1
Hepe07g0768 . 59 170 WRKY Transcription Factor Family AT5G41570 70.5 3.4e-43 171.8
Hepe05g1979 . 94 205 WRKY Transcription Factor Family AT5G41570 63.4 8.2e-37 150.6
Hepe05g0048 . 140 368 WRKY Transcription Factor Family AT5G07100 55.4 1.0e-62 236.9
Hepe08g0694 . 152 366 WRKY Transcription Factor Family AT5G07100 56.2 4.0e-62 235.0
Hepe10g1368 . 222 429 WRKY Transcription Factor Family AT5G07100 54.1 8.3e-52 200.7
Hepe06g0728 . 162 265 WRKY Transcription Factor Family AT5G52830 76.9 2.1e-44 176.8
Hepe04g1972 . 98 263 WRKY Transcription Factor Family AT4G18170 56.3 1.6e-43 173.7
Hepe02g0037 . 30 228 WRKY Transcription Factor Family AT4G18170 50.5 8.2e-40 161.4
Hepe03g0037 . 126 222 WRKY Transcription Factor Family AT4G18170 75.3 1.4e-36 150.6
Hepe02g3191 . 13 496 WRKY Transcription Factor Family AT2G03340 50.9 5.1e-116 415.2
Hepe10g1775 . 26 495 WRKY Transcription Factor Family AT2G03340 51.1 1.5e-115 413.7
Hepe06g0539 . 211 463 WRKY Transcription Factor Family AT2G03340 53.7 2.0e-64 243.8
Hepe10g1368 . 225 429 WRKY Transcription Factor Family AT2G03340 52.7 5.5e-46 182.6
Hepe04g1747 . 57 557 WRKY Transcription Factor Family AT4G22070 51.6 1.3e-106 384.0
Hepe07g0482 . 228 344 WRKY Transcription Factor Family AT4G22070 69.5 1.4e-39 161.4
Hepe09g0135 . 236 406 WRKY Transcription Factor Family AT4G22070 52.9 5.8e-38 156.0
Hepe09g0577 . 121 509 WRKY Transcription Factor Family AT4G30935 53.8 2.2e-102 369.8
Hepe06g1242 . 326 611 WRKY Transcription Factor Family AT2G38470 50.3 2.9e-66 250.0
Hepe10g1775 . 203 450 WRKY Transcription Factor Family AT2G38470 53.3 1.1e-65 248.1
Hepe06g0539 . 219 461 WRKY Transcription Factor Family AT2G38470 52.3 4.6e-64 242.7
Hepe10g1368 . 231 429 WRKY Transcription Factor Family AT2G38470 63.7 5.6e-62 235.7
Hepe02g3191 . 224 452 WRKY Transcription Factor Family AT2G38470 52.8 7.3e-62 235.3
Hepe07g1659 . 5 284 WRKY Transcription Factor Family AT2G34830 51.1 2.6e-60 229.9
Hepe04g2070 . 226 494 WRKY Transcription Factor Family AT2G34830 64.1 2.4e-58 223.4
Hepe10g1775 . 112 495 WRKY Transcription Factor Family AT1G13960 55.6 6.3e-97 351.3
Hepe02g3191 . 132 496 WRKY Transcription Factor Family AT1G13960 51.2 1.2e-82 303.9
Hepe06g0539 . 211 464 WRKY Transcription Factor Family AT1G13960 51.7 1.3e-65 247.3
Hepe05g0048 . 154 369 WRKY Transcription Factor Family AT1G13960 51.0 1.3e-60 230.7
Hepe10g1368 . 224 429 WRKY Transcription Factor Family AT1G13960 51.4 7.6e-50 194.9
Hepe02g1294 . 6 275 WRKY Transcription Factor Family AT1G80840 57.4 5.3e-73 271.6
Hepe04g1747 . 118 558 WRKY Transcription Factor Family AT4G04450 52.4 7.1e-95 344.7
Hepe02g0232 . 99 494 WRKY Transcription Factor Family AT4G04450 51.4 2.6e-89 326.2
Hepe09g0135 . 245 415 WRKY Transcription Factor Family AT4G04450 55.0 4.1e-42 169.5
Hepe02g3408 . 7 146 WRKY Transcription Factor Family AT3G01970 55.0 1.4e-39 159.5
Hepe02g1696 . 79 170 WRKY Transcription Factor Family AT3G01970 77.2 2.1e-38 155.6
Hepe05g1187 . 133 224 WRKY Transcription Factor Family AT3G01970 75.0 2.7e-38 155.2
Hepe05g1368 . 147 325 WRKY Transcription Factor Family AT5G49520 55.7 9.6e-46 181.4
Hepe02g0037 . 138 252 WRKY Transcription Factor Family AT5G49520 67.8 6.7e-39 158.7
Hepe07g0768 . 69 172 WRKY Transcription Factor Family AT1G64000 74.8 2.9e-43 172.2
Hepe10g0586 . 134 304 WRKY Transcription Factor Family AT1G69310 59.4 1.4e-46 183.7
Hepe03g0037 . 125 221 WRKY Transcription Factor Family AT1G69310 76.3 6.3e-39 158.3
Hepe02g0232 . 44 504 WRKY Transcription Factor Family AT1G62300 50.5 1.8e-103 373.6
Hepe02g0232 . 272 360 WRKY Transcription Factor Family AT1G18860 76.4 2.2e-37 154.1
Hepe07g1840 . 56 261 WRKY Transcription Factor Family AT1G29280 52.2 1.2e-49 193.7
Hepe02g0116 . 16 278 WRKY Transcription Factor Family AT1G29280 51.1 9.6e-47 184.1
Hepe02g0116 . 1 293 WRKY Transcription Factor Family AT3G58710 56.3 2.9e-54 209.1
Hepe04g1972 . 97 254 WRKY Transcription Factor Family AT1G29860 57.0 4.1e-43 172.2
Hepe02g0037 . 138 294 WRKY Transcription Factor Family AT1G29860 56.4 9.5e-40 161.0
Hepe03g2055 . 1 338 WRKY Transcription Factor Family AT5G28650 53.2 3.2e-79 292.4
Hepe04g1263 . 132 289 WRKY Transcription Factor Family AT5G28650 59.5 1.3e-43 174.1
Hepe01g1792 . 252 427 WRKY Transcription Factor Family AT5G28650 51.6 4.1e-42 169.1
Hepe08g1152 . 167 304 WRKY Transcription Factor Family AT5G28650 60.9 9.1e-42 167.9
Hepe05g1187 . 133 224 WRKY Transcription Factor Family AT5G13080 85.9 1.4e-42 169.5
Hepe02g1696 . 76 172 WRKY Transcription Factor Family AT5G13080 82.5 5.2e-42 167.5
Hepe02g3408 . 48 146 WRKY Transcription Factor Family AT5G13080 74.7 1.3e-40 162.9
Hepe07g0482 . 83 379 WRKY Transcription Factor Family AT1G68150 50.6 1.5e-61 233.8
Hepe09g0135 . 245 339 WRKY Transcription Factor Family AT1G68150 81.1 5.1e-41 165.6
Hepe07g2287 . 222 379 WRKY Transcription Factor Family AT1G68150 56.6 1.5e-40 164.1
Hepe04g1747 . 317 414 WRKY Transcription Factor Family AT1G68150 75.5 1.5e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000978 3 3 1 1 3 3 4 3 3 2 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 2 3 4 3 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55184 PF03106 WRKY 9.30E-26 CL0274 Hepe TF