Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3440 ATGGCGACTTCACCGACCGCTATAAGGGATGAGGAACATGGCCTTTCTAAACAGAAAGATGGAGGAGATCAGTCTACAGTGGAAATTGAACAGTCCTTGTCCGTTAGCGAGGATAACACCACAAAAACAAAGGATGAAGGACTTGATGAAGTAGCAAAGGGCAAGAACATCGATTCGAAATGTGAGGCTCAAGATGAAGTGGTGGAGAGGGAGAATGTTCAAGGTGAATTGCATCATGAGGTGGAAACCAAGTTGGATTTGCAGCCTAAATCTGAAGTTGAAAAGGTGGATCAGAGTATTAGAAACGATGACTCGAATGAAAGTCTAGTAGAGGATAAGAATGCAGAATCTGAATCGTCATCAGATGATTCAGACAATGAGGGTGCAGGCTTAGATTCTAAGGCTCAGAAAAGGACAAACCAAACAATTGGAGAAGTTCTTGGTGAGGAGAAAGCCCCAGAGCCAGTGTTTGATGGGACTGAGGTCCCTGGGATGGAAGGTAGTGGAAGTTTGTCAAACCGTTCCATGGATAGTGATACAGAGAGCCAAGGTGTTGTTGACAGGGCATTGGCACTAAAAAATTTCGTTAAGGAAAAGGGCGTAGTTGTAGTCTCTAATGTTTTACGTCGTTTTTCAGGAGGAAAAAAAGATGAAGAAAGTACAGATATTCATATTCCTAATGACGAGACTAAGGATGAATCCAATTCGAATAAAGAAATTGAAATCCCTGAAAAGCCTTTGGACAGATCTGCTTGGAATCCCCTCAACTATATTAAGATATCTCGTGATGCTGATGCACAAATCAAAACTGAGCAGGTGGAGGATGTTGCTGGAGAAGCATCATTCGATGTCGTTATGAAAGGCAGAATTGTACTGTTCACACGGTTAGATTGTGAAGATTGCAAAGAGGCTCGACTATTTTTGTTTTGGAAGAGACTTAGATATGTTGAGATCAATGTTGATGTTTATCCGGGTAGAAAGTTGGAGCTTGAGAAAATTGCCGGGTCTTCTGCTGTTCCAAAGGTATTTTTTAATTCGACCCTTATCGGAGGCTTGAACGAACTAAGAGAATTGGATGAGTCTGGAAAGTTTGATGAGAAAATTGAGTATCTGAAAGCTGAAGCACCATTATCACTTGCAGCCCCTTTACCACCTCTTTCTGGTGAAGACGATGTCTCCAGTAATGGGACTGTTGATGAATTGGCTATGATTGTTCGAAAAATGAAAGAATCCATTGTTATTAAGGACCGGTTCTGCAAAATGCGACGATTCACCAACTGTTTCCTAGGCTCAGAAGCTGTGGATTTCTTATCAGAGGATCAATATTTGGAAAGAGAAGAGGCTATTGAATTTGGACGCAAGCTCGCAAGCAAACTTTTTTTCCAACATGTTCATGAGGAAAATCTATTCGAAGATGGTAGCTACTTATACCGGTTCTTGGATGATGATCCCATTGTGGCAACTCAATGTCACAACGTTGCAAGAGGTATAATTGAGGTGAAGCCAAAGTCCATAACAGATATTGCCTCAAGGCTGAGATTTTTATCCTTCGCCATTTTTGAAGCTTATGTATCAGAGGATGGAAAGCATGTAGATTACAGAAGTATTCATGGGAGTGAGGAATTTGCTAGGTTTTTGAGAATTGTTGAGGAGCTCCAAAGAGTTGAAGTACACAATTTGGCACGGGAGGAGAAGCTCGCTTTCTTTATTAATCTCTACAATATGATGGCCATCCATGCAATATTGGTATGTGGTCATCCTGTTGGAGCGCTGGAAAGAAGGAAACTGTTTGGAGACTTCAAATATGTCATTGGAGGGTCCACCTTTTCCCTTTCAGCTATTCAAAATGGAATTTTGAGGGGCAATCAGAGACCACCTTACAATCTCATGAAACCATTTGGTGCAAAAGATAAACGTTCTAAAGTTTCTCTTGCGTATGTGGAGCCTTTAACTCATTTTGCACTAGTTTGTGGTACCCGATCTGGTCCTTCTCTTCGATGCTATTCTCCAGGGAACGTAGATCACGAGTTGTTGGAAGCAGCACGGAGTTTCTTAAGAGACGGAGGAATTGTCCTTGATTTGAATACCAATGTTGCATCAGTTAATATGATTCTTAAATGGTTTAGTACAGACTTTGGGAAGAACGAGCAAGAAGTCCTGAAGCATGCATCAAACTACATGAAACCAGAGGATTCACAAGCATTGCTTGAATTGCTTGCAAGTTCTCAGTTGAAGGTATTATATCAAACATACGATTGGGGTTTGAACTGTTAA 2274 41.16 MATSPTAIRDEEHGLSKQKDGGDQSTVEIEQSLSVSEDNTTKTKDEGLDEVAKGKNIDSKCEAQDEVVERENVQGELHHEVETKLDLQPKSEVEKVDQSIRNDDSNESLVEDKNAESESSSDDSDNEGAGLDSKAQKRTNQTIGEVLGEEKAPEPVFDGTEVPGMEGSGSLSNRSMDSDTESQGVVDRALALKNFVKEKGVVVVSNVLRRFSGGKKDEESTDIHIPNDETKDESNSNKEIEIPEKPLDRSAWNPLNYIKISRDADAQIKTEQVEDVAGEASFDVVMKGRIVLFTRLDCEDCKEARLFLFWKRLRYVEINVDVYPGRKLELEKIAGSSAVPKVFFNSTLIGGLNELRELDESGKFDEKIEYLKAEAPLSLAAPLPPLSGEDDVSSNGTVDELAMIVRKMKESIVIKDRFCKMRRFTNCFLGSEAVDFLSEDQYLEREEAIEFGRKLASKLFFQHVHEENLFEDGSYLYRFLDDDPIVATQCHNVARGIIEVKPKSITDIASRLRFLSFAIFEAYVSEDGKHVDYRSIHGSEEFARFLRIVEELQRVEVHNLAREEKLAFFINLYNMMAIHAILVCGHPVGALERRKLFGDFKYVIGGSTFSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSKVSLAYVEPLTHFALVCGTRSGPSLRCYSPGNVDHELLEAARSFLRDGGIVLDLNTNVASVNMILKWFSTDFGKNEQEVLKHASNYMKPEDSQALLELLASSQLKVLYQTYDWGLNC 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83771440 83776893 - Hsped.02g34400.1 Hepe02g3440 564941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3440 757 CDD DEP 400 478 - -
Hepe02g3440 757 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 412 479 IPR000591 GO:0035556(InterPro)
Hepe02g3440 757 SUPERFAMILY Winged helix DNA-binding domain 399 488 IPR036390 -
Hepe02g3440 757 ProSiteProfiles Glutaredoxin domain profile. 278 375 - -
Hepe02g3440 757 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 69 757 - -
Hepe02g3440 757 MobiDBLite consensus disorder prediction 39 120 - -
Hepe02g3440 757 Gene3D Glutaredoxin 285 371 - -
Hepe02g3440 757 MobiDBLite consensus disorder prediction 20 38 - -
Hepe02g3440 757 MobiDBLite consensus disorder prediction 215 239 - -
Hepe02g3440 757 MobiDBLite consensus disorder prediction 166 182 - -
Hepe02g3440 757 MobiDBLite consensus disorder prediction 1 182 - -
Hepe02g3440 757 Pfam Glutaredoxin 290 349 IPR002109 -
Hepe02g3440 757 SMART DEP_3 408 481 IPR000591 GO:0035556(InterPro)
Hepe02g3440 757 Gene3D - 389 486 IPR036388 -
Hepe02g3440 757 ProSiteProfiles DEP domain profile. 408 481 IPR000591 GO:0035556(InterPro)
Hepe02g3440 757 Pfam Protein of unknown function, DUF547 558 685 IPR006869 -
Hepe02g3440 757 SUPERFAMILY Thioredoxin-like 284 369 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3440 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2564 Hepe-Chr2:72586309 Hepe02g3440 Hepe-Chr2:83771440 2.37e-115 dispersed
Hepe02g3440 Hepe-Chr2:83771440 Hepe10g1016 Hepe-Chr10:40323614 6.89e-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g352 . . . . . . . . . . . . . . Sed11g1510 . . Bhi04g02500 Tan11g0084 Cmetu09g1872 . Hepe02g3440 . Lcy10g2331 . . . . . . . . Cone7ag1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00765 Cam11g0798 Cec11g0780 Cco11g0785 Clacu11g1059 Cmu11g0919 Cre11g1244 . . Chy03g00066 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007851 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 1 2 1 1 36