Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3445 ATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAACCAACCGATGATAAGGCACAAAGACGTTTAGCGCAAAACCGTGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGTAAGATGGAGGTCATCTTTTCTAACACTCTCTCTATGGTCTATCCAATTGAACATAAAAATTTTGTTGCAGGGTGTATACACAAACTGCTTAGTAGATACCAGCCACTTGGGATTCGGCGGATCGGTAAACCCAGGGATTGCTGTATTTGAGATGGAATACAGTCACTGGGTTGAAGAGCAACAGAGACTAATCACCGAACTCAGAAAGGCGTTGCAAGTTCATATAACCGATATAGAACTTCAAATTTTAGTTGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCAGAGCGTTTTTTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAGAGCCGATATCCACAATTTGCAACATTCATCTCGGCAAGCTGAAGATGCTCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGTGATTCTATAATAGGGAGCTATATTTCTCAGATGGGTGATGGGATGGAGAAACTAGACGCATTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCCCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGTGTTCTCAGTTCCCTCTGGGCCACTCGACCTCGTGAACCTGCCTAG 1005 45.07 MDHLESSQEMNKPTDDKAQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKVRWRSSFLTLSLWSIQLNIKILLQGVYTNCLVDTSHLGFGGSVNPGIAVFEMEYSHWVEEQQRLITELRKALQVHITDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKPYFEPLNEQQRADIHNLQHSSRQAEDALSQGMEKLHQNLSLSIASDSIIGSYISQMGDGMEKLDALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWATRPREPA 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83814221 83818989 + Hsped.02g34450.1 Hepe02g3445 564946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3445 334 SUPERFAMILY Leucine zipper domain 17 64 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3445 334 SMART brlzneu 13 73 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3445 334 Gene3D - 16 71 - -
Hepe02g3445 334 Pfam Seed dormancy control 128 202 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Hepe02g3445 334 MobiDBLite consensus disorder prediction 1 29 - -
Hepe02g3445 334 MobiDBLite consensus disorder prediction 1 34 - -
Hepe02g3445 334 PANTHER TRANSCRIPTION FACTOR TGA9 7 333 - -
Hepe02g3445 334 Coils Coil 209 229 - -
Hepe02g3445 334 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 20 35 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3445 334 FunFam BZIP family transcription factor 16 65 - -
Hepe02g3445 334 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 15 65 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3445 334 Pfam bZIP transcription factor 16 56 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g3445 334 ProSiteProfiles DOG1 domain profile. 110 329 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Hepe02g3445 334 Coils Coil 36 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3445 Hepe-Chr2:83814221 Hepe07g0658 Hepe-Chr7:7560779 1.57e-103 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55187 PF14144 DOG1 1.10E-28 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3445 K14431 - csv:101217648 538.495