Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3468 ATGGATGCTATCGAGGAGTTGGCTCAGTTATCGGACTCGATGCGGCAAGCTGCAGCTTTGCTTGCCGATGAGGACATCGATGAAACTTCCACCTCCGGTGCTTCCTCTCGTAGGCCTTCCACTTTCCTCAACGCCGTGGCCCTCGGGAATGTGGGAGCTGGTAAATCTGCAGTTTTAAATAGCTTGATTGGACATCCTGTTTTGCCAACTGGTGAAAATGGTGCTACTAGGGCTCCTATAAGCATTGATTTACAGAGGGATGATTCATTGAGCAGCAAATCAATTATGTTGCAGATTGACAATAAGTCTCAGCAAGTTTCTGCAAGTGCTTTGCGACACTCACTACAGGACAGATTAAGTAAAGGTTCCTCTGGCAAGAGCCGCGATGAAATCTATTTGAAGCTCCGCACTAGTACAGCACCTCCGTTGAAATTGATTGATTTACCCGGGCTTGATCAGCGGAGCGTGAATGAATCATTGATTAGTGAATATGCTGAGCACAACGATGCCATTTTGCTAGTCATTGTGCCTGCCTCTCAAGCAGCCGAGATTTCTTCAACTCGTGCCCTTAGACTGGCAAAGGATTATGACGGTGAAGGGACTAGAACTATTGGGATAATTAGCAAAATAGATCAAGCTGCTTCAGATCAGAAAGCTCTGGCTGCTGTTCAGGCTCTATTATTAAATCAAGGACCACCGAAAGCTTCAGATATACCATGGGTTGCTTTAATTGGTCAATCTGTTTCAATAGCTTCTGCACAGTCTGGATCTGTTGGCTCTGAAAATTCTTTGGAAACTGCCTGGAGGGCCGAGACCGAAAGTCTGAAATCCATATTGACTGGAGCCCCTCAGAGTAAACTGGGTAGAATTGCTTTGGTGGATGCTTTGGCTCATCAAATACAGAACCGTATGAAAGTCAGACTTCCAAACCTATTATCAGGGTTACAAGGAAAGTCTCAGGTTGTTCAAGATGAGTTATCAAAGTTTGGTGAGCAGGCGGAAAGTGCTGAAGGGACAAGAGCTGTAGCCTTGCAACTCTGCCGTGAATTTGAGGATACGTTTCTTCAGCACATTGCAACTGGTGAGGGTACTGGTTGGAAAATTGTTGCTAGTTTTGAGGGAAACTTTCCAAATAGAATCAAGCAGCTCCCTCTAGACAGACATTTTGACATTAACAATGTGAAGAGGATCGTGTTAGAAGCTGATGGTTATCAACCATATTTGATATCCCCTGAAAAGGGTTTGCGATCTCTAATAAAAGGTGTGTTAGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGATGAGGTCCATCGCGTTCTAGTGGATATAGTTTCTGCTGCTGCAAATTCTACACCAGGTCTTGGAAGATACCCGCCTTTCAAGAGAGAGATTGTGGCCATCGCAAGTGCTGCATTAGATGGATTTAAGAATGAAGCGAAGAAAATGGTAGTTGCACTTGTTGACATGGAGCGAGCTTTTGTGCCTCCACAACATTTTATTCGATTGGTACAAAGGAGGATGGAGAGGCAGCGTCGAGAGGAGGAGGTGAAGCACAAATCATCAAAGAAAGGTCAAGACGCAGAGCAAGCAATATTAAACAGGGCAACTAGCCCTCAAACTAGTGGTCAACAAAGTAGTGGAAGCCTGAAATCAATGAAGGAAAAACCAGGCAAAGAGGACAAGGAAGTACAGGAAACTTCTAGTTTGAAGACTGCAGGTCCAGAAGGGGAAATAACAGCAGGTTTCCTGTTAAAGAAAAGCACAAAAACAAATGGATGGAGTAAAAGATGGTTTGTTCTAAATGAGAAGACGGGAAAGCTTGGTTACACTAAGAAGCAAGAGGAGAGACATTTCCGTGGTGTGATCACTTTGGAGGAATGTAATGTTGAAGATGCTTCAGACGAGGAAGAAGCTCCTTCAAAGAGTTCAAAAGATAAGAAAGCTAACGGACCAGATTCTGGAAAAGGTCTCGTGTTCAAGATCACGAGCAAGGTTGCATATAAAACTGTTCTTAAAGCACACAACGCTGTTATCTTGAAGGCCGAAAATATGGCTGACAAGCTTGAATGGATGAATAAGATACGGAATGTTATTCAACCTTCCAGAGGACAGATGAAGGGTCCTGAAAGTGGTCTTCCCATGCGGCAGAGTCTTTCTGATGGTTCTCTTGATACAATGACGATGGCTAGAAGACCTGTTGATCCGGAAGAAGAACTACGGTGGATGTCCCAAGAAGTACGTGGTTATGTTGAAGCTGTTTTGAACAGTTTGGCTGCCAATGTCCCAAAAGCAGTCGTCCTCTGCCAAGTAGAGAAAGCCAAGGAAGATATGCTTAATCAGTTGTATAGTTCCATCAGCGCTCAAAGCACACCAAGGATAGAGGAGCTACTTCTCGAGGATCACAATGTAAAGAATAAGAGAGAACGCTACCAAAAACAATCATCTCTTCTTTCTAAATTGCTACATCAACTCAGTGTACATGACAACCGAGCAGCGGCTGCAGCCAACTGGTCTGACAGTGGCGCCGAAAGCAGTCCGAGAAAGAGTGCTCCATCAGGTGAAGAGTGGAAATCTGCCTTTGATGCTGCAGCTAATGGTCCTGCAAACTACAGTAGATCTCCATCCAATGGTCATAGTCGACGTTACAGTGATCCAGATCAAAATGGGGATTTGAACTCGCGTTCAAGCTCGAGCAGTCGCCGTACTCCAAACCGGATGCCTCCTCCCCCACCGCCATCTTCGGGTTCAAAATACTATTAG 2763 44.77 MDAIEELAQLSDSMRQAAALLADEDIDETSTSGASSRRPSTFLNAVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDDSLSSKSIMLQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLIDLPGLDQRSVNESLISEYAEHNDAILLVIVPASQAAEISSTRALRLAKDYDGEGTRTIGIISKIDQAASDQKALAAVQALLLNQGPPKASDIPWVALIGQSVSIASAQSGSVGSENSLETAWRAETESLKSILTGAPQSKLGRIALVDALAHQIQNRMKVRLPNLLSGLQGKSQVVQDELSKFGEQAESAEGTRAVALQLCREFEDTFLQHIATGEGTGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVSAAANSTPGLGRYPPFKREIVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKHKSSKKGQDAEQAILNRATSPQTSGQQSSGSLKSMKEKPGKEDKEVQETSSLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEDASDEEEAPSKSSKDKKANGPDSGKGLVFKITSKVAYKTVLKAHNAVILKAENMADKLEWMNKIRNVIQPSRGQMKGPESGLPMRQSLSDGSLDTMTMARRPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTPRIEELLLEDHNVKNKRERYQKQSSLLSKLLHQLSVHDNRAAAAANWSDSGAESSPRKSAPSGEEWKSAFDAAANGPANYSRSPSNGHSRRYSDPDQNGDLNSRSSSSSRRTPNRMPPPPPPSSGSKYY 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83989667 84003560 + Hsped.02g34680.1 Hepe02g3468 564969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3468 920 MobiDBLite consensus disorder prediction 631 655 - -
Hepe02g3468 920 Gene3D Dynamin, middle domain 334 545 - -
Hepe02g3468 920 MobiDBLite consensus disorder prediction 904 920 - -
Hepe02g3468 920 MobiDBLite consensus disorder prediction 635 652 - -
Hepe02g3468 920 PANTHER DYNAMIN 35 822 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Hepe02g3468 920 SMART PH_update 578 702 IPR001849 -
Hepe02g3468 920 FunFam Dynamin-2A 696 808 - -
Hepe02g3468 920 SMART GED_2 735 828 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g3468 920 Gene3D - 563 703 IPR011993 -
Hepe02g3468 920 Pfam Dynamin family 46 209 IPR045063 -
Hepe02g3468 920 MobiDBLite consensus disorder prediction 535 575 - -
Hepe02g3468 920 FunFam Dynamin-2B isoform A 41 324 - -
Hepe02g3468 920 MobiDBLite consensus disorder prediction 535 552 - -
Hepe02g3468 920 FunFam Dynamin-2A 334 541 - -
Hepe02g3468 920 Pfam Dynamin central region 262 499 IPR000375 -
Hepe02g3468 920 Coils Coil 794 814 - -
Hepe02g3468 920 MobiDBLite consensus disorder prediction 869 903 - -
Hepe02g3468 920 SUPERFAMILY PH domain-like 578 700 - -
Hepe02g3468 920 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 68 77 IPR019762 -
Hepe02g3468 920 MobiDBLite consensus disorder prediction 702 721 - -
Hepe02g3468 920 SMART dynamin_3 4 241 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g3468 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 318 IPR027417 -
Hepe02g3468 920 Gene3D - 44 324 IPR027417 -
Hepe02g3468 920 FunFam Dynamin-2A 570 704 - -
Hepe02g3468 920 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 39 309 IPR030381 GO:0005525(InterPro)
Hepe02g3468 920 MobiDBLite consensus disorder prediction 836 920 - -
Hepe02g3468 920 Pfam Dynamin GTPase effector domain 738 821 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe02g3468 920 ProSiteProfiles GED domain profile. 740 833 IPR020850 -
Hepe02g3468 920 MobiDBLite consensus disorder prediction 553 567 - -
Hepe02g3468 920 PRINTS Dynamin signature 198 214 IPR022812 -
Hepe02g3468 920 PRINTS Dynamin signature 42 60 IPR022812 -
Hepe02g3468 920 PRINTS Dynamin signature 179 197 IPR022812 -
Hepe02g3468 920 PRINTS Dynamin signature 67 84 IPR022812 -
Hepe02g3468 920 ProSiteProfiles PH domain profile. 577 700 IPR001849 -
Hepe02g3468 920 Pfam PH domain 581 699 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3468 K01528 - - csv:101220030 1570.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3468 Hepe-Chr2:83989667 Hepe06g0252 Hepe-Chr6:9170785 0.0 dispersed
Hepe02g3468 Hepe-Chr2:83989667 Hepe05g1811 Hepe-Chr5:68374562 5.32e-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69