Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g3470 ATGCCGACGCACCCACGTTCACCGCCTTCAACTTCAAGAAATGCGCGCCTTTATTATTTCCCAAATTCCCACTTTCAATTCCATCCAAACCCAATAACAATGCGCCTTCTATTTTCTCTCTTCTTCATCTTCAACCTCGCCTCCGCCTGCTACGTCGGCGACCAAAATGCCCTTCTCGCCTTCAAATCCGCCATTACTGCCGACCCTTCGGGCATTTTAAGCTCATGGAACTCCACCGTCGACTGCTGCACTTGGCCCGGAGTCGCTTGCTTAATCCCCAATCGAGTCACCAGTCTCAGCCTCTACGGCCAACTCGACCGCCCCAACTCCTTCCTCTCCGGCACCATCTCCGATTCTCTCTCAAACCTCCCTTACTTGGACGGAATCTACTTCGTCAACCTTCGTAACATTTCAGGTCCTTTTCCACTTTCACTCTTCAAACTCCCCAAACTCCTCTTCGTCTACATCGAGAACAGCAAGCTTTCAGGTCAATTGCCGCCCGCAATCGGAAATTTGAGCCAACTCGACGCACTGAGTTTTGAAGGTAACAGATTCACCGGTCCGATTCCGACTTCAATTTCCAAATTGACTCGGTTGTCTCAGCTCAAACTCGGTAGCAATCTTCTCACTGGCTCCATACCGATTGGAATCCAGCGACTCAAAAGCCTGACGTTCCTCGGCCTCGAACGGAATCGGCTCGCCGGTCCCGTTCCGGATATTTGGGGAGCATTTCCGGAGCTGAGGATTCTCAGACTCTCTCACAATAAACTCTCCGGCAAAATTCCAAGCTCAATTTCAGCTCTGGCGCCGAAACTCAGTTACTTGGAGCTAGGGCACAATTTGATTACAGGGAACATCCCTGATTTTCTCGGAAATTTTAGGGCATTGGATACTCTAGATCTCTCCTCCAATTACTTCTCTGGAGTTGTGCCGAAAAGCTTCAGGAATTTGACGAAAATATTCAACCTCGATCTGTCGCGGAATTCGCTGGTGGATCCGTTCCCGGAGTTGTTCGTGAAAGGAATCGAGTCGCTGGATTTGTCGTACAACAAATTTCACCTCGGGAAAATTCCGAAATGGGTGACATCGTCGCCGATAATCTACTCTCTGAAATTGGCGAAATGTGGGATCGAAATGAAGCTGGAGGATTGGAAACCGATCGAAACGTATTTCTACGATTACATTGATCTATCGGAGAACGAGATTTGGGGCAGTCCGGTCGGGTTGTTGAACCGGACGGGTTACTTGGTCGGATTTTGGGGCTCCGGGAATAAGTTGAATTTTAAGCTGCAAGATTTGAGGATTGTGAAGACGTTGAAGTACTTGGATTTGTCGAGAAATTTGGTTTCCGGTAAGGTTCCCGGCGGCGTGGTGGGGCTTGAGAAACTGAACGTCAGCTACAATCACCTGTGCGGCCGGATTCCGGCGACCAAATTCCCGGCGACGACGTTTTTGGGGAATGATTGTTTGTGTGGCCCGCCGCTGCTGCCCTGCAAATGA 1500 49.8 MPTHPRSPPSTSRNARLYYFPNSHFQFHPNPITMRLLFSLFFIFNLASACYVGDQNALLAFKSAITADPSGILSSWNSTVDCCTWPGVACLIPNRVTSLSLYGQLDRPNSFLSGTISDSLSNLPYLDGIYFVNLRNISGPFPLSLFKLPKLLFVYIENSKLSGQLPPAIGNLSQLDALSFEGNRFTGPIPTSISKLTRLSQLKLGSNLLTGSIPIGIQRLKSLTFLGLERNRLAGPVPDIWGAFPELRILRLSHNKLSGKIPSSISALAPKLSYLELGHNLITGNIPDFLGNFRALDTLDLSSNYFSGVVPKSFRNLTKIFNLDLSRNSLVDPFPELFVKGIESLDLSYNKFHLGKIPKWVTSSPIIYSLKLAKCGIEMKLEDWKPIETYFYDYIDLSENEIWGSPVGLLNRTGYLVGFWGSGNKLNFKLQDLRIVKTLKYLDLSRNLVSGKVPGGVVGLEKLNVSYNHLCGRIPATKFPATTFLGNDCLCGPPLLPCK 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 84012124 84014624 + Hsped.02g34700.1 Hepe02g3470 564971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g3470 499 Pfam Leucine rich repeat N-terminal domain 54 90 IPR013210 -
Hepe02g3470 499 SUPERFAMILY L domain-like 76 454 - -
Hepe02g3470 499 Gene3D Ribonuclease Inhibitor 226 499 IPR032675 -
Hepe02g3470 499 FunFam Leucine-rich repeat receptor protein kinase EMS1 239 337 - -
Hepe02g3470 499 Gene3D Ribonuclease Inhibitor 52 216 IPR032675 -
Hepe02g3470 499 PANTHER POLYGALACTURONASE INHIBITOR 1 218 498 IPR051848 -
Hepe02g3470 499 Pfam Leucine rich repeat 270 330 IPR001611 GO:0005515(InterPro)
Hepe02g3470 499 Pfam Leucine Rich Repeat 247 268 IPR001611 GO:0005515(InterPro)
Hepe02g3470 499 SMART LRR_typ_2 457 486 IPR003591 -
Hepe02g3470 499 SMART LRR_typ_2 293 316 IPR003591 -
Hepe02g3470 499 SMART LRR_typ_2 244 268 IPR003591 -
Hepe02g3470 499 SMART LRR_typ_2 220 243 IPR003591 -
Hepe02g3470 499 FunFam Leucine-rich repeat receptor protein kinase EMS1 141 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g3470 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26