Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g0008 | ATGTACACTACACTCCAAGTTTTGAAGACAGTTCTCTTGTCATCATTCATCAAGACAACACAGCTTCTCGGGTGGAGCGTTAAGAGAAGAGAGGTTTTTTACATGGTGGACGGAAAGAAGATCATCGGCGGCGAGAAGCCAAAGCGATTGGGGAAGTACGAGCTGGGAAAAACTCTCGGCCAAGGCACTTTTGGAAAGGTCAAATTTGCCATCAACTTTGAAACCGATCAACCTTTTGCTGTCAAGGTTCTCGACAAGACCAAGATCATCCACCTCAACATCACCGATCAGGTGTTGGCCAGTAAAAGCAAAATTTACATGGTTCTTGAGTACGTGAAGGGCGGAGAATTGTTTGATAGAATCGCATCCAAGGGGAAGCTATCAGAATCCCAAGCCAGAAAAATCTTCCAACAGTTAATTGATGCTGTGAGTTACTGCCATACTAAAGGCGTTTTCCATAGGGATCTCAAGCTGGAGAACATACTTGTTGATGCCCAGGGAAATATTAAGATATCTGATTTTGGCTTTAGTGCTTTACCCGAGCATTTTAGGGATGACGGTTTGCTTCACACGACCTGCGGAAGCCCCAACTACGTGGCACCTGAGATTCTTGCTAACAGAGGGTATGATGGTGCGGCCTCAGATATATGGTCCTGTGGTGTTATCTTGTACGTAATTCTTACCGGATCACTCCCTTTCGATGATAGAAATTTGTGTGTCCTTTACCATAAGATCTTTAATGGAGAAACTCAGGTACCCAAGTGGGTGTCACAAGGGGCCCAAGATTTGATCAGAAGAATTCTTGATCCCAACCCTATTTCTCGGATTAGTGTGGCAGGTATCAAAATGGACGAGTGGTTTAGAAAGGACTACGATCCAACCTACCTTGACGATGAAGAAGAGGATATCTCAATGCATCAAGTGTCATCTCCCACCACTATAAATGCTTTTCAACTGATTGGAATGTCCTCGTGCCTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACGTTTCTGAGAGGAAGATCAGATTTACAACCAATCATTCCGCCAAAGAAGATATCCTCAAGCGGATGGGGGATCTTGTAACAGAGATGGGGTTTCTTGTCCAGCAGAAAGAAGGAAGGTTGAAAGTAATGAGAGAGCAGAAGGGTCAGAATGGTGTGGGCAGTATTCTGTGTGTATCAGCAGAGGTTTTTGATATAAGTCCATCACTATATGTCGTAGAGTTGAGAAAGTCGCAGGGAGATTCATCTTCATATAGACAGTTGTGTAAAATACTATCAAGTGATTTGGGTATCCCCTCCAGGCAAGACTCGGTGATGACGTAG | 1329 | 44.17 | MYTTLQVLKTVLLSSFIKTTQLLGWSVKRREVFYMVDGKKIIGGEKPKRLGKYELGKTLGQGTFGKVKFAINFETDQPFAVKVLDKTKIIHLNITDQVLASKSKIYMVLEYVKGGELFDRIASKGKLSESQARKIFQQLIDAVSYCHTKGVFHRDLKLENILVDAQGNIKISDFGFSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILYVILTGSLPFDDRNLCVLYHKIFNGETQVPKWVSQGAQDLIRRILDPNPISRISVAGIKMDEWFRKDYDPTYLDDEEEDISMHQVSSPTTINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTTNHSAKEDILKRMGDLVTEMGFLVQQKEGRLKVMREQKGQNGVGSILCVSAEVFDISPSLYVVELRKSQGDSSSYRQLCKILSSDLGIPSRQDSVMT | 442 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 112109 | 121877 | + | Hsped.03g00080.1 | Hepe03g0008 | 565006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g0008 | 442 | Pfam | Protein kinase domain | 98 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe03g0008 | 442 | ProSiteProfiles | Protein kinase domain profile. | 53 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe03g0008 | 442 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 48 | 421 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Hepe03g0008 | 442 | FunFam | Non-specific serine/threonine protein kinase | 311 | 434 | - | - | |
Hepe03g0008 | 442 | CDD | CIPK_C | 315 | 431 | - | - | |
Hepe03g0008 | 442 | SMART | serkin_6 | 53 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe03g0008 | 442 | Gene3D | Phosphorylase Kinase; domain 1 | 98 | 115 | - | - | |
Hepe03g0008 | 442 | Gene3D | Kinase associated domain 1, KA1 | 309 | 433 | - | - | |
Hepe03g0008 | 442 | ProSiteProfiles | NAF domain profile. | 309 | 333 | IPR018451 | GO:0007165(InterPro) | |
Hepe03g0008 | 442 | SUPERFAMILY | Protein kinase-like (PK-like) | 49 | 325 | IPR011009 | - | |
Hepe03g0008 | 442 | Pfam | NAF domain | 311 | 370 | IPR004041 | GO:0007165(InterPro) | |
Hepe03g0008 | 442 | FunFam | Non-specific serine/threonine protein kinase | 112 | 294 | - | - | |
Hepe03g0008 | 442 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 151 | 163 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe03g0008 | 442 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 288 | - | - | |
Hepe03g0008 | 442 | ProSitePatterns | Protein kinases ATP-binding region signature. | 59 | 82 | IPR017441 | GO:0005524(InterPro) | |
Hepe03g0008 | 442 | Gene3D | Phosphorylase Kinase; domain 1 | 44 | 96 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g0008 | Hepe-Chr3:112109 | Hepe07g1747 | Hepe-Chr7:59864705 | 5.18e-130 | dispersed | |
Hepe10g1336 | Hepe-Chr10:49487216 | Hepe03g0008 | Hepe-Chr3:112109 | 1.08e-15 | dispersed | |
Hepe03g0008 | Hepe-Chr3:112109 | Hepe05g1338 | Hepe-Chr5:61764598 | 2.51e-182 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
72629 | PF00069 | Pkinase | 2.40E-52 | CL0016 | Hepe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g0008 | K07198 | - | csv:101206030 | 600.897 |