Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0008 ATGTACACTACACTCCAAGTTTTGAAGACAGTTCTCTTGTCATCATTCATCAAGACAACACAGCTTCTCGGGTGGAGCGTTAAGAGAAGAGAGGTTTTTTACATGGTGGACGGAAAGAAGATCATCGGCGGCGAGAAGCCAAAGCGATTGGGGAAGTACGAGCTGGGAAAAACTCTCGGCCAAGGCACTTTTGGAAAGGTCAAATTTGCCATCAACTTTGAAACCGATCAACCTTTTGCTGTCAAGGTTCTCGACAAGACCAAGATCATCCACCTCAACATCACCGATCAGGTGTTGGCCAGTAAAAGCAAAATTTACATGGTTCTTGAGTACGTGAAGGGCGGAGAATTGTTTGATAGAATCGCATCCAAGGGGAAGCTATCAGAATCCCAAGCCAGAAAAATCTTCCAACAGTTAATTGATGCTGTGAGTTACTGCCATACTAAAGGCGTTTTCCATAGGGATCTCAAGCTGGAGAACATACTTGTTGATGCCCAGGGAAATATTAAGATATCTGATTTTGGCTTTAGTGCTTTACCCGAGCATTTTAGGGATGACGGTTTGCTTCACACGACCTGCGGAAGCCCCAACTACGTGGCACCTGAGATTCTTGCTAACAGAGGGTATGATGGTGCGGCCTCAGATATATGGTCCTGTGGTGTTATCTTGTACGTAATTCTTACCGGATCACTCCCTTTCGATGATAGAAATTTGTGTGTCCTTTACCATAAGATCTTTAATGGAGAAACTCAGGTACCCAAGTGGGTGTCACAAGGGGCCCAAGATTTGATCAGAAGAATTCTTGATCCCAACCCTATTTCTCGGATTAGTGTGGCAGGTATCAAAATGGACGAGTGGTTTAGAAAGGACTACGATCCAACCTACCTTGACGATGAAGAAGAGGATATCTCAATGCATCAAGTGTCATCTCCCACCACTATAAATGCTTTTCAACTGATTGGAATGTCCTCGTGCCTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACGTTTCTGAGAGGAAGATCAGATTTACAACCAATCATTCCGCCAAAGAAGATATCCTCAAGCGGATGGGGGATCTTGTAACAGAGATGGGGTTTCTTGTCCAGCAGAAAGAAGGAAGGTTGAAAGTAATGAGAGAGCAGAAGGGTCAGAATGGTGTGGGCAGTATTCTGTGTGTATCAGCAGAGGTTTTTGATATAAGTCCATCACTATATGTCGTAGAGTTGAGAAAGTCGCAGGGAGATTCATCTTCATATAGACAGTTGTGTAAAATACTATCAAGTGATTTGGGTATCCCCTCCAGGCAAGACTCGGTGATGACGTAG 1329 44.17 MYTTLQVLKTVLLSSFIKTTQLLGWSVKRREVFYMVDGKKIIGGEKPKRLGKYELGKTLGQGTFGKVKFAINFETDQPFAVKVLDKTKIIHLNITDQVLASKSKIYMVLEYVKGGELFDRIASKGKLSESQARKIFQQLIDAVSYCHTKGVFHRDLKLENILVDAQGNIKISDFGFSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILYVILTGSLPFDDRNLCVLYHKIFNGETQVPKWVSQGAQDLIRRILDPNPISRISVAGIKMDEWFRKDYDPTYLDDEEEDISMHQVSSPTTINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTTNHSAKEDILKRMGDLVTEMGFLVQQKEGRLKVMREQKGQNGVGSILCVSAEVFDISPSLYVVELRKSQGDSSSYRQLCKILSSDLGIPSRQDSVMT 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 112109 121877 + Hsped.03g00080.1 Hepe03g0008 565006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0008 442 Pfam Protein kinase domain 98 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0008 442 ProSiteProfiles Protein kinase domain profile. 53 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0008 442 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 48 421 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe03g0008 442 FunFam Non-specific serine/threonine protein kinase 311 434 - -
Hepe03g0008 442 CDD CIPK_C 315 431 - -
Hepe03g0008 442 SMART serkin_6 53 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0008 442 Gene3D Phosphorylase Kinase; domain 1 98 115 - -
Hepe03g0008 442 Gene3D Kinase associated domain 1, KA1 309 433 - -
Hepe03g0008 442 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Hepe03g0008 442 SUPERFAMILY Protein kinase-like (PK-like) 49 325 IPR011009 -
Hepe03g0008 442 Pfam NAF domain 311 370 IPR004041 GO:0007165(InterPro)
Hepe03g0008 442 FunFam Non-specific serine/threonine protein kinase 112 294 - -
Hepe03g0008 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g0008 442 Gene3D Transferase(Phosphotransferase) domain 1 116 288 - -
Hepe03g0008 442 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524(InterPro)
Hepe03g0008 442 Gene3D Phosphorylase Kinase; domain 1 44 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0008 Hepe-Chr3:112109 Hepe07g1747 Hepe-Chr7:59864705 5.18e-130 dispersed
Hepe10g1336 Hepe-Chr10:49487216 Hepe03g0008 Hepe-Chr3:112109 1.08e-15 dispersed
Hepe03g0008 Hepe-Chr3:112109 Hepe05g1338 Hepe-Chr5:61764598 2.51e-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72629 PF00069 Pkinase 2.40E-52 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0008 K07198 - csv:101206030 600.897