Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0012 ATGGCGCCTGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTTTGGGTATTTACTGGAATCCTGGTGGGGGTGTTTATTGTAGTAATCCTTGTGGTTCTATCAATATGTGTTACTACACGAAGAAAGTCTAGAAGGGTTAATGGCATGCTTCCTCTCAGCCGTACTCCTCCCACTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTTCAGCAATCCAGCATGGCGGATTCGAAACGGAGTCGGAAAAAGTTCTTCTATATTCAAACAAGGCGTATAATTACAGCATATCAAGCTCAGTTGATCACACAGAGATATATGCTATTGATTCTGGAGAAGGAAGCAAGAAAGCAAGTGGGTTGCATAGACCCTCAGATCCAATACCACCGGACCCTTCGCCACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAGAGGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTAATCTTATCAATGGGACACCTGTGGCTGCCAAAAAGCTTCTAAATGTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTGGAAGCGTTTGGGCATGTGCGGCATAAGAACTTAGTTCGGCTGTTGGGGTACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTATGTGGACAATGGAAATTTGGAGCAGTGGCTTCATGGAGCTCTACGTCAGCATGGATATCTCACTTGGGAAGCACGAATCAGAATTCTCCTTGGTACTGCCAAGGCGCTGGCATATTTGCACGAGGCAATCGAACCAAAAATTGTGCATCGAGATATCAAGGCTGCTAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGTTAGCCAAATTACTCGGTGCTGGGAAGAGTCATATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCGCCAGAATATGCCAAATCTGGGCTTCTAAATGAAAAGAGCGATGTTTATAGTTTTGGAGTGGTCCTTTTGGAAGCAATTACTGGGAGAGACCCTGTTGATTATGGTCGTCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGAAGCAAACGGTCAGAGGAGGTGGTAGACCCAAATATAGAGAGAAAGCCATCGGTTAGTGAACTGAAGAGAGCTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTGCCCGCATGCTCGAGTCCGAGGAATATCCAATTCTTCGACAGGATCGGAGACCGAGAAAGGATGTTATTGCAACCAAAACGGAGACTGAGAAACAGGAGAGAGGACCAAGACGACACAGATAA 1401 44.68 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVVILVVLSICVTTRRKSRRVNGMLPLSRTPPTASKEIKEIGVDHVSAIQHGGFETESEKVLLYSNKAYNYSISSSVDHTEIYAIDSGEGSKKASGLHRPSDPIPPDPSPLGWGHWFTLRDLELATMHFSEDNIIGEGGYGVVYRGNLINGTPVAAKKLLNVGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALRQHGYLTWEARIRILLGTAKALAYLHEAIEPKIVHRDIKAANILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSVSELKRALLTALRCVDPDADKRPKMSQVARMLESEEYPILRQDRRPRKDVIATKTETEKQERGPRRHR 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 157791 161926 + Hsped.03g00120.1 Hepe03g0012 565010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0012 466 SUPERFAMILY Protein kinase-like (PK-like) 142 444 IPR011009 -
Hepe03g0012 466 Gene3D Transferase(Phosphotransferase) domain 1 235 446 - -
Hepe03g0012 466 MobiDBLite consensus disorder prediction 420 466 - -
Hepe03g0012 466 FunFam Putative receptor-like serine/threonine-protein kinase 235 446 - -
Hepe03g0012 466 PANTHER OS01G0323000 PROTEIN 1 456 IPR052232 -
Hepe03g0012 466 CDD STKc_IRAK 166 431 - -
Hepe03g0012 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g0012 466 FunFam serine/threonine-protein kinase PBS1-like 137 234 - -
Hepe03g0012 466 SMART serkin_6 160 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0012 466 Gene3D Phosphorylase Kinase; domain 1 144 234 - -
Hepe03g0012 466 Pfam Protein kinase domain 161 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0012 466 MobiDBLite consensus disorder prediction 434 466 - -
Hepe03g0012 466 ProSiteProfiles Protein kinase domain profile. 160 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0012 466 ProSitePatterns Protein kinases ATP-binding region signature. 166 189 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0036 Hepe-Chr2:518877 Hepe03g0012 Hepe-Chr3:157791 3.92e-181 dispersed
Hepe03g0012 Hepe-Chr3:157791 Hepe08g0621 Hepe-Chr8:5451857 2.61e-182 dispersed
Hepe03g0012 Hepe-Chr3:157791 Hepe08g2232 Hepe-Chr8:62070809 1.35e-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72630 PF00069 Pkinase 4.60E-48 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0012 - - - 0.0