Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0040 ATGCTCCGGGGATTGATGAATCTGCTCTCCCTTTGCTGGAAGCCGTTCGGGCATGCTACTGAAAATTTGACCTCTGTTGGAGTCATTGGAACCAATTGTGGCGGCAAAGATACTAAAGATAGCCTACTCTGGTTCTATGATTACGGTAACTATGCTTCCGGTGATTTTTCCATGGCTGTTGTTCAAGCCAACCAAGTGCTCGAGGACCAGAGCCAGATTCAATCTGGTCCTTTTGGCACCTTCGTCGGAATCTACGATGGTCACGGCGGCCCCGACGCCGCTCGATTCGTCTGCGATAACTTGTTTACGCGTTTCCAAGCAATTTCAAATGAAGAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTGATACAGAGGAAGGGTTCACAGCCGTTGTGTCGGAGTTGTGGAGTACTCGACCTCAGATAGCAACAGTTGGGACGTGTTGTCTAGTAGGGGTGATACATGAGCAGACACTCTACATTGCGAGTCTTGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCATCACTGGGGAGATTGCTGCCATTCAGTTATCGACGGAGCATAATGCAAATCTTGAGGATATCAGGCATGAATTAAGAGATATGCATCCAAATGATCCTCAAGTTGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGCATTATACAGGTTTCTAGATCCATTGGGGATGTCTATATGAAACATGCTCGGTATAATACTGACAGAATCAATGCTAAATTTAGACTTCCTGAACCGATGGATATGCCTATATTGACTGCTGTACCTACAATTTATGCTCATCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGATATCGTCCATAATCATCCTCGTGCAGGAAGTGCAAAAAGGCTCGTGAAGGCAGCCCTTCAAGAAGCAGCCAGAAAACGAGAGATGCGTTACTCAGATCTCCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCACGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGACCTTATATCCAGAAGCAACGTCCTCCTAGATCAGCCATTATCAGTCCGAAGTGCCCTTGATCATTGA 1143 45.14 MLRGLMNLLSLCWKPFGHATENLTSVGVIGTNCGGKDTKDSLLWFYDYGNYASGDFSMAVVQANQVLEDQSQIQSGPFGTFVGIYDGHGGPDAARFVCDNLFTRFQAISNEERGVVTRETILNAFRDTEEGFTAVVSELWSTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGITGEIAAIQLSTEHNANLEDIRHELRDMHPNDPQVVVQRHGVWRVKGIIQVSRSIGDVYMKHARYNTDRINAKFRLPEPMDMPILTAVPTIYAHPLHQNDSFLIFASDGLWEHLTNEKAVDIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSALDH 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 478916 482940 - Hsped.03g00400.1 Hepe03g0040 565038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0040 380 PANTHER PROTEIN PHOSPHATASE 54 355 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Hepe03g0040 380 CDD PP2Cc 56 356 IPR001932 -
Hepe03g0040 380 SUPERFAMILY PP2C-like 64 357 IPR036457 -
Hepe03g0040 380 Gene3D - 48 365 IPR036457 -
Hepe03g0040 380 ProSiteProfiles PPM-type phosphatase domain profile. 55 356 IPR001932 -
Hepe03g0040 380 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Hepe03g0040 380 FunFam Probable protein phosphatase 2C 42 46 364 - -
Hepe03g0040 380 SMART PP2C_4 49 354 IPR001932 -
Hepe03g0040 380 Pfam Protein phosphatase 2C 80 323 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0040 Hepe-Chr3:478916 Hepe06g0898 Hepe-Chr6:56257293 1.33e-143 dispersed
Hepe03g0040 Hepe-Chr3:478916 Hepe08g0307 Hepe-Chr8:2764993 7.58e-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0040 K01102 - csv:101207284 701.434